Daphnia pulicaria: 124315048
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Entry
124315048 CDS
T08670
Name
(RefSeq) exosome complex component RRP41-like
KO
K11600
exosome complex component RRP41
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124315048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124315048
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124315048
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
124315048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
124315048
NCBI-ProteinID:
XP_046636363
LinkDB
All DBs
Position
10:3481728..3483045
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AA seq
246 aa
AA seq
DB search
MSGNELLSDQGLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRG
SKSKALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQ
IDIFVEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKDVPLVDVNHVEQSG
GSPELVVSILPHSGEIVYMSLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMKGHLTKLD
TSLQAS
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaatgagcttttatccgatcaaggtttaaggattgatggccgaaaacccaac
gaattgcgcaggattcgctgctcacttggcattttctctcaagctgatggttcggcttat
ttggaacaaggaaatactaaagttctagccgcagtttacggacctcatgaaattcggggt
tcaaaatcaaaagcgttgcatgacaaggcatttgtcaactgtcagtacagcacagcaact
tttagtatgggagagagaaagcgcagacccaggggtgatcgtaaaagcactgaaatgtca
acacacttggaagagacctttgctgccgctataaggactgaactgtatcctagatctcaa
attgacatatttgtagaggtcttgcaagccgatgggggaaattatacagcgtgcgtcaac
gcagcaatgatggccctggtcgatgccggcgttcctctgaaagacactgttgtctcttgc
actgcctctctggttaaggacgtccctcttgtagatgtaaatcatgtcgaacaaagtgga
ggtagcccggaattggtcgtttccattctgccgcattcgggagagatagtttacatgtcg
ctaactcaacgattccatatcgatcacctcagcaaagttttggatactgctatcaaagga
tgtaaggatattggtgccattttgaatgaaattatgaaagggcatctaacgaaattagac
acttcgttacaagcatcttga
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