Daphnia pulicaria: 124315310
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Entry
124315310 CDS
T08670
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpz03016
]
124315310
Enzymes [BR:
dpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124315310
Transfer RNA biogenesis [BR:
dpz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124315310
Prokaryotic type
tRNA splicing ligases
124315310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Adeno_PX
Motif
Other DBs
NCBI-GeneID:
124315310
NCBI-ProteinID:
XP_046636859
LinkDB
All DBs
Position
1:24395182..24397669
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AA seq
505 aa
AA seq
DB search
MVRTYDDEMKFLERLSPCSWRIKKGFVPNMNVEGIFYVNNNLEDLMFDELRNACAQGLVG
GFLPGMKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMDDPNSIVSPGGVGFDI
NCGVRLLRTNLTEKDVQPFKEQLTQSMFDHIPVGVGSKGVIPITAQDLEEALEMGVDWSL
REGYAWAEDKEHCEEFGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDK
WAANKMGIEHKGQVCIMIHSGSRGFGHQVATDALNSMDKAMKRDKIVTNDRQLACARISS
TEGQDYLKGMAAAANFAWVNRASMTFLCRQAFAKQFNSTPDDLDMHVIYDVSHNIAKVEQ
HTVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYILTGTEQGMV
ETFGSTCHGAGRALSRAKSRRNLDYTEVLDRLKEQGISIRVASPKLVMEEAPESYKNVTD
VVDTCHAAGISKKTVKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggttcgaacgtacgacgatgaaatgaaatttttggaaaggctatctccttgctcttgg
cgcataaaaaagggatttgttcctaacatgaacgttgaaggaattttctatgtcaacaat
aatttggaagacctcatgtttgacgagctaagaaatgcatgtgctcaaggtttagttggt
ggatttctccctggaatgaaacagattgccaatgttgctgcccttcctggcatcgtggga
agatcaattggcttgcccgatgttcattctggctatggctttgccattggaaatgtagca
gcatttgatatggatgatcccaactccatagtatctccaggtggagtgggttttgatatt
aattgtggagtcaggctgttgaggacaaacttgaccgaaaaggatgttcaaccttttaag
gaacaattgactcaaagcatgtttgatcacattcctgttggagttggatcgaaaggagta
attccaattactgcacaggatcttgaagaagccttagaaatgggagtggattggtcgctc
cgcgaaggatatgcctgggcagaagataaagagcactgtgaggaatttggcagaatgctg
aatgccgatccttcgaaagtcagccttcgagccaaaaagaggggacttcctcagttgggt
actcttggagcaggaaaccattatgcggaaattcaagtagtggatgaaatctacgacaaa
tgggccgccaacaagatgggaattgaacacaagggacaagtttgtattatgattcattcc
ggtagcagaggattcggccaccaagttgcaacagatgctctgaattcgatggacaaagcc
atgaaaagagataagatcgtgactaacgatcgccaactagcttgcgctcgaatctcgtct
accgaaggtcaagactacttgaagggtatggcagcagcggcaaatttcgcttgggttaat
cgagcatccatgactttcctctgccgtcaagcatttgctaagcaattcaactcgacaccg
gacgaccttgacatgcatgttatctacgatgtctcacacaatattgccaaagtggaacaa
catactgttgacggaaaacttaaaactttgctggttcatcgaaagggttctactcgtgct
ttcccacctcaccatccattaattccggtcgactaccagctaacaggtcagcccgttctc
atcggtgggacaatgggtacgtgcagctacatcttgaccggtactgaacaagggatggta
gaaacattcggatcaacctgtcatggagccggtcgagctctatcccgtgcgaaatcacgt
cgtaacttggactacaccgaggttttggatcgtttgaaggaacaaggcatttccatcaga
gtcgcctctccaaagttggtcatggaagaagccccagaatcttacaaaaatgtcaccgat
gttgtcgatacttgtcatgctgctggcattagcaaaaaaactgtcaaactccgtccgatt
gccgttattaaagggtaa
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