Daphnia pulicaria: 124316143
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Entry
124316143 CDS
T08670
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
dpz
Daphnia pulicaria
Pathway
dpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124316143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124316143
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124316143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
AAA_22
Motif
Other DBs
NCBI-GeneID:
124316143
NCBI-ProteinID:
XP_046637858
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Position
12:complement(904658..908435)
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AA seq
913 aa
AA seq
DB search
MADSTNVPEIPHEQGFISFHGNLPEKLATTLRFFDRGEFFTLYGQDALLASRDYFKTHSV
VKMLGYGAKKLESVVLNKSHFENFARDVLLVKHYCIEIYNGSKSDWSLQYQASPGNLTQV
EDLIFGSTDITSQVGILAFKIGSENQIGCSYVDTYARKILVAQFSDNDAFSNLESLIVQL
SPKEVLIPHGEAYVAPKTMLNRHGLLVNENKKAEFSSTESVRLLNRLLRFKKGQQENAAA
LPEVSLDHSMAALAALIKHLDLMADETNFGQFSLQNFDFTQYMKLDSAASAALHLTSYGA
EVSTMVTSKAGAPRTIAALLNKCRTSGGQRLLAQWIKQPLTDKNRIDRRLDVVETFVNDV
QLRQTITEDHLRRMPDYQRLAKKLQKAKANLQDLYKLYLGLSRLPVLVDCLLENQGDHAA
VLIDVLIQPLRNANEKLVKLKEMVETTIDLNQADRGDFIIKADFDDQLGELKKELDDCGP
RAEKVLSRAASDLKLETSKSVKLESNAQIGYYFRVTLKDEKNLRNNSNYQTIDTNKNGVR
FRNHDLAKVNETYLKVRHDYEEQQSSVVKEILSVAAGYVEHLQSLNDALSKLDVLTSFAV
CSISAPIPYVRPQILEKGSGSIELIQVRHPCMELQDGVNFIPNDAIFHKDGHRFYIITGP
NMGGKSTYLRSIGVAVLMAQIGCFVPASSATISIVDAILARVGAGDCHLKGVSTFMAEMI
ETANITRTATKDSLVIIDELGRGTSTFDGFGLAWAIAEHIAVKIQPYALFATHFHELTAL
ADEVPAVDNLHVTALTGDNTFTLLYRVQPGSCDQSFGLHVAELVHFPQEVLKIAQKKAKE
LEAIQPNNNKSGEPTMKRRKGDNAEGDTLMRTYLERAKKIMEQKKDVNCEEMQELRKEIT
KTTDPFIRNVLNM
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctacaaatgtaccagaaatcccccacgaacaaggttttatcagtttccat
ggaaatcttccagagaaacttgccactactctgcgattctttgatcgaggggaatttttt
accttgtatgggcaagatgcccttctcgcttcaagagattacttcaaaacacacagtgtc
gtcaagatgctggggtatggagctaagaagttggaatcggtggtcctcaacaaaagtcac
tttgagaactttgcacgtgatgtactgttagtcaagcactactgcattgaaatctacaat
ggatccaaaagcgactggtctctccaatatcaagcaagtcctggaaacctcacccaagtg
gaagatttgatttttggatcgactgacataacctctcaagttggtattctagcattcaaa
attggctcagaaaatcaaataggatgcagctatgtggatacttatgcaagaaagatactc
gtggcacagttttcagacaatgatgccttctcaaatttagaatctctcatcgtccaacta
agtccaaaggaggttttgatcccacatggtgaagcttacgttgcgccgaaaacaatgctg
aaccgacatggactgctagtaaatgaaaacaagaaagctgagttttcatccacagaatca
gttcggctacttaatcgactcttgcgctttaaaaaaggacaacaagaaaacgcagctgcg
cttcctgaagtcagtttagatcattccatggcagctctggccgccctaatcaaacatcta
gacctaatggccgacgaaacaaactttgggcagttcagtctacaaaactttgactttact
caatacatgaaacttgattcggcagcatccgccgccctgcatcttacttcgtacggagct
gaggtctcgacaatggtgacgtccaaagctggagctcctcgtacaatcgctgcactgctc
aacaagtgtcgaacttcgggtgggcagcgactgttggctcagtggatcaaacaacctctt
acagataaaaacaggattgatagacgtctagatgtcgtagaaactttcgtcaatgatgtc
caattacgacaaacgataacagaggatcacctccgacggatgccggattaccaaagacta
gccaagaagttgcaaaaggctaaagccaacttacaagatctctacaagttgtacttgggc
ttgagtcgcttgccggtgctggtcgactgcttactggagaaccagggggatcatgccgct
gttcttatagacgtgctcatccaaccattacgaaatgcgaacgaaaagcttgtcaaattg
aaagagatggtagagacaactatagacctcaatcaagcagatcgaggcgattttatcatc
aaggcagactttgacgaccaactaggagagctcaaaaaagaactagatgattgcggcccg
agagctgaaaaggtcctatcccgagcggcatccgatctcaagctggagacttccaagagc
gtcaaattggagagcaacgctcagatcggctattatttccgagtcactttgaaggatgaa
aagaatcttcgcaacaacagcaattaccaaacaattgatactaataaaaatggcgttcga
ttccggaaccatgacttggcaaaagtcaatgaaacttacttgaaagtgcgccacgattat
gaggaacaacaaagttcagttgttaaagaaatcttgtcagtcgctgctggatacgttgaa
catctgcagtcgttgaacgatgccttgtcaaagctggatgtactgacaagtttcgccgta
tgctcaattagcgctccaattccgtacgtcagaccgcaaatcttggagaaaggatcgggg
agcattgaactaattcaagtcagacatccgtgtatggaactccaagacggagttaatttc
atccccaacgacgcaatttttcacaaagatgggcatcgtttctacattattaccgggccc
aatatgggtggaaagagcacctacttgcgttccatcggggtggctgtcctgatggcccaa
atcggctgtttcgttccagcttcttcagccaccatttcaatcgttgatgccattttagct
cgagtcggagctggtgattgccatctcaaaggcgtatcaactttcatggctgaaatgatt
gagaccgccaacatcaccagaacggctacaaaggactctttggtaatcattgacgaattg
ggaagaggaacttctacctttgatggatttggattagcctgggcaattgcggaacacatt
gctgtgaaaattcagccgtatgcgttgtttgccacgcactttcacgagctaactgcattg
gcggatgaagtgccggcagtggacaatcttcacgtaactgctttgaccggtgacaacacc
ttcacgttgttgtatcgcgtccagccaggctcgtgcgatcaatcatttgggcttcacgtc
gctgaattggttcatttccctcaagaggttttgaagattgcccaaaagaaggcgaaagag
ttggaagccatacagcctaataataacaaatcaggtgaaccgacaatgaaacgtcgcaag
ggcgataacgcggaaggtgatacattgatgcggacgtatttggaacgtgccaaaaaaata
atggagcaaaagaaagatgtgaattgtgaagaaatgcaagaattgcgaaaagaaataaca
aagaccacggacccgttcattcgaaatgtcttgaatatgtaa
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