Daphnia pulicaria: 124320224
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Entry
124320224 CDS
T08670
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
dpz
Daphnia pulicaria
Pathway
dpz04512
ECM-receptor interaction
dpz04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124320224
04518 Integrin signaling
124320224
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dpz00536
]
124320224
Glycosaminoglycan binding proteins [BR:
dpz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124320224
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
124320224
NCBI-ProteinID:
XP_046638935
LinkDB
All DBs
Position
1:40958400..40967658
Genome browser
AA seq
1562 aa
AA seq
DB search
MRLAMGRSGRIQRLPLLLLLVVLISAGVSGKPQQGAGGGEESPEGDYADNYDEYNPVDYE
PEYEEGADGGRRPAQPGRNGPGRAPAPAPVDENGDGDVESGGRPDVAAPAPAQPEATEEE
NPDDYEPGQTDPPPPPPPAPTTTTQRPVYRPPPAPPAQPPARAPAAPLVTATGNDDCAGV
VCPEVECETQQYIRLGECCPVCAAVGPEDGEQSMGPQGEIGTPGRPGEAGEPGTPGNPGT
PGNPGPPGPPPDVTPFLQSLQTSQGGAEKGPGPDPFSFLQAQTGPVGPRGTGGPPGPPGP
QGFQGVRGEAGEPGPVGAPGGGGPRGLPGLPGKDGDSGEDGQPGPTGAAGPAGPRGLPGM
PGLPGVKGHRGFPGLDGSKGEPGPSGEKGTQGLTGPMGPVGPTGPAGPRGERGREGPPGP
AGLRGIDGLAGPPGPPGAVGKSGPPGFPGSPGSKGDMGGPGPKGSQGLQGPRGEAGKPGV
PGEAGPPGPAGKDGLAGDKGSQGEVGIAGAPGFPGARGPPGLAGSPGTPGAKGHPGESGT
PGVKGETGLKGEVGAGGPRGLPGPTGAAGKRGKIGPRGTSGASGPPGERGAPGGRGLPGA
DGPPGPKGQNGDRGPAGPDGPKGKVGDPGRPGPPGLQGLRGLPGRTGPPGKPGSAGERGL
PGADGKNGEQGPQGIQGLPGPTGIPGERGLMGENGKDGDPGPTGAPGPRGDSGKDGAAGA
QGPPGPPGADGERGPPGPAGARGFQGLPGVAGTPGNPGKDGEPGLQGVSGLPGASGPRGE
RGFPGERGPVGPPGGPGERGPVGMMGADGPSGPSGPKGDKGHAGPSGLVGLPGQRGQPGL
SGEKGERGTQGPIGPEGPAGKQGERGLQGIMGPPGPPGEPAERGDTGPPGPAGEAGAMGM
TGERGPPGGPGLQGFPGPQGPSGISGTKGERGLSGSKGEQGNPGAVGNPGEPGSPGLQGL
VGPKGARGESGNKGDQGLMGPPGRAGEQGPAGSQGPPGPPGSAGMPGIKGQPGDNGRTGN
AGPPGQPGAPGSEGQKGEQGSEGPIGPVGQSGPQGPPGDRGLPGLPGPVGAIGARGLRGS
AGETGPPGRPGNEGPPGPIGLVGPVGPIGPPGEPGPEGSPGKEGPPGIGGRPGDKGPPGS
VGPLGPPGPSGLPGSPGQSGPPGPTGERGSIGETGPMGVEGPPGPRGKPGVQGIQGERGE
RGESGAKGAKGHRGLIGLQGLPGALGAQGDRGPMGLAGPPGKSGEPGPKGPAGRDGSSGP
QGIMGPPGPRGPAGESGKSGPPGSPGPAGPPGPPGESMGYDAAALAAILGQGSSKGPDPM
AGDDPSRLFAKLTDDDRKALVVKAYEQLKVSFDKYTKPSGDKAAPARTCRDLAVAHPELP
SGDYWIDPNQGDTKDSILVFCEMNRRSTCIRPKPEKTKQITYLGKPRAEVWFSEMDSGFQ
FTYKSDSNQMTFLQLLSTHGSQNLTYHCRNSVANYDANDRSYKKSMKILGWNDIELNAMG
KKRFKYEVTEDECKSRSDTWAKSVITFETDKPNRLPFVDVGIFDIGEPNQQFSLEIGMAC
FW
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttgcgatgggccgcagcggcaggatacagcggctaccgctcctgctgctcctc
gtcgtcctcatctcggccggcgtgagcggcaagcctcaacaaggagccggaggtggagag
gaatcacccgaaggagactacgctgataactacgacgagtacaatcccgttgactacgaa
ccagaatacgaagaaggcgcagacggaggtcggagaccggcccagcccggacgtaacgga
cctggccgagctcccgctccggctcctgtcgacgaaaatggagatggtgatgttgaaagc
ggaggccgcccagatgttgcagctcctgcaccagctcaaccagaagctacagaggaggaa
aatccggatgattacgaaccgggtcagaccgatcctccaccaccgcctccaccggcccca
acaacgacaactcaaaggcccgtctatcgcccgcctcccgctccaccagcacagccacca
gcgagagctcctgctgctccactcgtgacagcaacaggcaacgatgattgcgctggagtc
gtatgcccggaggtcgagtgcgagactcagcagtacattcgtctcggcgaatgctgcccg
gtttgcgcggctgtcggtcctgaagatggagaacaatcaatgggtccccaaggtgagatt
ggcactcctggacgtcctggagaagctggcgagcccggaacaccaggcaaccccggtact
cctggcaaccctggaccaccaggaccaccacccgatgtgactcccttcctgcagtcgttg
cagacctcgcaaggcggagccgagaaaggccctggaccagatccgttctctttccttcaa
gctcaaaccggacccgtaggtcctcgcggaacaggcggccctcccggccctccaggtcct
cagggattccaaggagttcgtggtgaagctggtgagcctggacctgttggcgctcctgga
ggtggtggaccgcgaggtctccccggtcttcccggcaaagatggtgactctggagaagac
ggtcaacctggaccaactggtgctgctggacctgcaggccctcgaggcttaccgggaatg
cccggtttgccaggagtcaaaggccaccgtggtttccccggtttggacggctccaaagga
gaacctggcccaagtggtgaaaagggaacgcaaggtttgaccggcccaatgggacctgtt
ggcccaactggtcctgctggcccacgaggagaaagaggacgtgaaggaccccctggccct
gctggtttaagaggaatcgatggtttggctggaccccccggaccacctggcgctgttggt
aaatcaggaccacccggcttccccggcagtcccggttccaaaggtgacatgggcggcccc
ggacctaaaggtagccaaggcttgcaaggcccacgcggagaggcaggcaaacccggagtt
cctggtgaagcaggtcctcctggcccggccggtaaagatggtctagctggtgacaaaggt
agccaaggtgaagttggtattgctggagctcctggtttccctggtgcccgcggtcccccc
ggacttgccggcagtccaggaacccctggtgctaaaggccaccctggtgagagcggtact
cctggtgtcaagggtgaaactggtttgaagggagaagtcggtgctggtggacctcgcggt
ctgcccggccctactggagctgctggtaagcgtggtaagatcggtcctcgcggtacaagt
ggtgcttctggcccacctggtgagcgtggtgcccccggaggaagaggtttgcccggagcc
gatggaccccctggacctaaaggtcaaaatggtgatagaggaccagctggtcctgacgga
cccaaaggaaaagtcggagacccaggtcgtcctggacctcctggtttgcaaggacttcgc
ggtcttccaggccgaactggacctcccggcaagcctggtagcgctggagaacgtggttta
cctggtgctgatggcaaaaacggagaacagggaccccaaggtatccaaggtcttcccgga
cctactggtattcccggagaacgcggtcttatgggagagaacggtaaagacggagatcct
ggaccgacaggagctcccggacctcgcggtgattcaggcaaagacggagctgctggtgcc
caaggtcctcccggccctcctggcgctgatggtgaacgcggtccccctggccctgctgga
gctcgtggtttccagggacttcctggtgtcgccggaactcctggtaaccctggtaaagat
ggtgaacccggtcttcaaggtgtttccggcttacccggtgccagcggacctcgcggtgag
cgtggattccctggcgaacgcggaccggttggtccacccggaggtcctggtgaacgcggt
ccagttggtatgatgggagctgacggtccatcgggtccatctggtcctaaaggtgacaag
ggtcatgccggtccttcaggtttagtgggtttgcccggtcaaagaggccaacctggtctg
tctggtgaaaagggtgaacgcggaactcagggcccgattggtcccgaaggtcctgcagga
aaacaaggtgaacgcggtttgcaaggtatcatgggtccccctggacctcctggcgagcca
gctgaacgaggtgacactggaccacccggaccggctggtgaagctggtgctatgggtatg
actggtgaacgcggacctcctggaggcccaggcttgcaaggcttccccggcccacaaggt
ccatccggtatttccggtaccaaaggtgaacgcggtctctctggatctaagggtgagcaa
ggcaaccccggtgctgtcggtaatcccggtgagcctggttcaccaggtttgcaaggtttg
gttggacctaagggtgctcgtggtgaatctggcaacaagggtgaccaaggtcttatgggc
ccacctggacgtgctggagaacagggtcctgctggatcacaaggacctcctggaccacct
ggctcagctggtatgcctggtatcaagggtcaacccggtgacaatggtcgcactggtaat
gctggaccccctggacaacccggagctcctggatctgaaggtcaaaaaggagaacaaggt
agcgaaggacctattggacctgttggacagtctggaccccaaggtccacctggagaccgt
ggtttacctggactcccaggccccgttggtgcgatcggtgctcgtggattacgcggatca
gccggtgaaactggacccccaggtagacccggaaatgaaggacctcccggtccaattggt
cttgttggcccagtcggcccgattggtccacctggagaacctggacctgaaggctcaccc
ggcaaagaaggacctcctggtattggtggacgccccggagacaagggaccccccggttcc
gttggccctctcggacctcccggtccttctggacttcccggatcacctggacaatctgga
cctcccggccctactggagagcgtggttccattggtgaaactggcccaatgggtgttgaa
ggccctcctggacctcgtggtaaacctggtgtccaaggtattcaaggtgaacgcggagag
cgtggagaatctggagctaaaggcgccaagggtcatcgcggtctcattggtctgcaaggt
cttcccggcgcacttggcgcccaaggagaccgaggaccgatgggtctcgctggacctcct
ggcaaatctggagaacctggacctaaaggtcctgctggccgtgacggaagctctggacct
cagggcattatgggaccacctggccctcgcggtcctgctggtgaatctggtaaatctggt
cctcccggctctcctggtcctgctggacctcctggacctcctggtgaatcgatgggttac
gacgctgctgcattggccgccatcctcggacaaggttcctccaagggacctgatccgatg
gctggtgatgacccgtctcgcctgtttgccaaactaacagacgacgaccgtaaagctttg
gttgtgaaagcttacgagcaactcaaggtctcgtttgacaagtacactaagcctagtgga
gacaaggctgctccagccaggacttgccgtgatctggccgttgcccaccctgaacttcca
tctggagactactggatcgatcccaaccaaggtgacaccaaagattctatcttggtattc
tgcgagatgaaccgacgatccacctgcatccgacccaagcccgagaaaaccaagcaaatt
acttatctcggcaaacctcgtgctgaagtttggttctccgaaatggattccggcttccag
ttcacttacaaatcagacagcaaccaaatgacattcttgcagctgttgtctactcacgga
agccaaaacttgacataccactgccgcaactccgtggctaattacgatgccaatgatcgg
tcctacaaaaaatcaatgaagattctcggctggaacgatattgagctcaacgctatgggc
aagaagagattcaagtacgaagtgaccgaagacgagtgtaaatctcgctccgacacttgg
gccaaatcggttatcacattcgagacggacaagcctaaccgattgccattcgttgatgtc
ggaattttcgacattggtgagccaaaccagcagttctctctggagattggcatggcttgc
ttctggtaa
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integrated database retrieval system
