Daphnia pulicaria: 124320233
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Entry
124320233 CDS
T08670
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
dpz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124320233
03015 mRNA surveillance pathway
124320233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124320233
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124320233
mRNA cycle factors
P-body specific factors
124320233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Utp13
HsbA
PEX11
Motif
Other DBs
NCBI-GeneID:
124320233
NCBI-ProteinID:
XP_046638960
LinkDB
All DBs
Position
1:40382053..40387116
Genome browser
AA seq
1198 aa
AA seq
DB search
MESTSELPDDCSLVLDEEEKEFLALKNFKEAIAEIEGHFTHKAKLRSRIHATIQNRPEES
HFSKLDSSIKKNTAFVRKLKNFTEAQKESILKDINTLNLTKYISEVANAIVEAKLKMTDI
ASILQVCVVLHEKYVDFAPQILEAWQKVLSLKKDEKISNPSKMRVDVRFYADLISCGVLT
PKEGLPLLGSFLTNLIHGDKEEHNSATIILAFCKFCGEDYAGLVSQKLLNDAERFKIAIP
TSNWLPADKRQNVRNLLREYYTSLCKHLTQDHKELQNFERQNRRILQTKGELSNERKEKQ
EILNQSFTKLLNMTQQFADILAEELPELRQDLSPRDEECSVLELCENMSDQARETLNELL
WENEEGRQFYESLPNLSVYLPNLIPKVTAETLPPPDPVEQMIDIEKEAKEIEEGEQVKDE
GDEDIKPAELEDEKEDADVPVSLQSNKVLLDSFLTTLTACVNREMIDSAAIEFSTNLNTK
HNRKKLVRALFTVQRTRLDLLPFYSRLVATLHPYIPEVATDLCNFLRQDFKYHVRKKDQI
NIETKVKIVRFIGELTKFGMYPCADALQCFKQLLLNFAHHYIEMTCHLLETCGRFLLHQP
DSHQRTKVYLDQMMRKKSMLASDSRYLTMIENAYYQVVPVDSSARSSHIKIRPPLHQYIR
QLLFVELGNKGSTNKILKQLRKLNWKDPEVASYAVRCLTSAWKVKFPNIRTLAGVVAELT
LYQEFVGHRIVDAVLEDIRWSLEFPISKFNQRRVSMAKYLAELYNYRMVESSVVFKVLYT
CITFAVSFDYNIESDLDQPDNLMRLRLVLTILDTCGVFFSSGLSKKRLDYYLVYLQYYYL
FKRSLPIWTDDNPFPVAIDFGIKDMLLTLRPKLKAYKTLQEAADAVENLEKELMNKLSQA
MPELQMDVVLADDTLACIEEEDMEEGEEMREVDDDSINDEQSLSRSMSQMTTRGETTQPD
EDTHNVEASRICNARKWLDANMSHLLQDDRCVVTAPRKALCPEDDDFMAALDRMVAENIH
DAYTRGKEVSKPPAVDIAIPWQVKASLKRPDGSDKNFLGDSIGGELGGALAVAEASSACA
AIASSPPSAVHDNPTVNFFLMTRKGNKPQFKNLAVPSDSELAQNLRNREEAEKAEKERVK
KLTLDFNERQEEEEFQDLYGGVNRPAVHNVNRDRRGRFQHPKGVPDAELIFGGARKNR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaatctacctctgagctacctgatgactgttctcttgtattggatgaagaggagaaa
gaattcttagccttgaaaaatttcaaagaagcaatagcggaaattgagggacattttact
cacaaagcaaagcttcgtagtaggattcatgcaacaattcaaaatcgtccagaagaatcc
catttttcgaaattagattcaagcattaaaaagaacacagcattcgttagaaagctcaag
aactttacagaagcccaaaaagaaagcattttgaaggacatcaacacactgaacctgacc
aaatacatcagtgaagttgccaatgcaattgttgaagcaaaattaaaaatgacagatatc
gccagcattctgcaagtgtgtgttgtccttcacgagaaatatgttgactttgccccccaa
attctagaagcatggcaaaaagttctttccttgaagaaagatgaaaagatttcaaatcca
agtaagatgagagtcgatgtccgattctatgcggatttgatatcgtgcggagttttgacc
cctaaagaaggtcttcctttactcggtagttttcttaccaatttgattcatggcgacaag
gaagaacataacagcgccaccatcattcttgctttctgcaagttttgtggggaggactac
gcaggtctcgtttctcaaaaattgctgaacgatgctgaacgcttcaaaatagctattcca
acgagcaactggcttccagctgacaaacgccaaaatgttagaaacctcctgcgtgaatat
tatacgtctctctgtaaacatcttactcaggatcacaaagaacttcaaaacttcgagaga
caaaatcggcggatcttacaaacgaaaggagaattaagcaacgaaagaaaagaaaagcag
gagattttgaatcaaagttttacaaaacttttgaacatgacccaacaatttgctgacatc
ttggctgaggagttacccgagcttcgacaagatctaagtcccagagacgaagagtgttct
gtgctggagctgtgcgagaacatgtcagatcaggcacgcgaaactctaaatgaacttctg
tgggagaacgaagaagggcgacagttctacgaaagtcttcctaatctgagcgtttatctc
ccaaacttgattcccaaagtcaccgcagaaactctgcctcctcccgatccagtcgaacag
atgattgatatcgaaaaagaagcgaaagaaatagaagaaggcgagcaagtcaaagatgaa
ggcgatgaagatatcaaacctgccgagttagaagatgaaaaagaggatgcagatgttcca
gtcagtcttcaatcaaataaagtgctactggatagttttcttaccactctgacagcttgc
gtcaatcgtgaaatgatcgactcagctgccattgagttttctacaaatctaaacacaaaa
cacaatcgcaagaaactcgttagggctctatttactgtacagcgaactcgattggatctc
ttgccattctactctcgactggtggccactttgcatccgtatatccctgaagttgcgaca
gatttgtgtaacttcctcagacaagacttcaaatatcatgttcggaaaaaggatcaaata
aatatcgagaccaaggtgaaaattgttcgtttcataggcgagctaacaaaatttggcatg
tacccatgcgcagatgcattgcaatgttttaaacagcttttgctaaactttgcccatcat
tacattgaaatgacgtgccatctgcttgagacgtgcggaagattcctgcttcaccagcca
gattcccaccaacgcacaaaagtctacttggatcaaatgatgcgaaagaaatcgatgttg
gcgtcagactcgcgctatctgacgatgattgagaatgcctactaccaagtcgttcccgtg
gatagcagtgctaggagtagtcacatcaaaatccgtcctccgctccatcaatacatccgc
caacttctttttgtcgagcttggaaacaaaggatctacaaataagatcctcaaacaactt
agaaagctcaactggaaagatcctgaagtagcatcttatgctgttcgctgtttaacttca
gcgtggaaggtcaagtttcctaacattcgtacattagctggggtcgtggccgagttgaca
ctctatcaggaattcgttggtcaccggatagtcgatgccgttttggaggatataagatgg
agtttagagtttcccatatcgaaattcaatcaaaggcgcgtgagcatggcaaaatacttg
gccgagctctacaactaccgcatggttgaatcatcggtcgtcttcaaagttctgtacact
tgcatcacgttcgcagtcagtttcgattataatatcgaatccgatttggatcagccagat
aaccttatgcggttacgattagtcttgaccatccttgacacatgcggagtctttttcagt
tcgggattgtctaaaaaacggttggactattacctggtttatctgcagtactactatttg
ttcaaaagatctttgccgatctggaccgatgacaatccatttccagtagcaattgatttt
ggcattaaggacatgctgttgaccctgcgtccgaaattgaaagcttataaaaccctgcaa
gaagctgccgatgcagtggaaaatctggagaaggaactgatgaataaactttcacaagct
atgccagaattgcagatggacgtggtacttgccgatgataccttggcctgcatcgaagaa
gaggatatggaggaaggcgaagaaatgcgggaagtggacgacgactctatcaatgatgag
caatcgctttctcgttccatgtctcaaatgaccacacgtggtgaaaccacccaaccggac
gaagacacgcacaacgtcgaagcaagtcgaatttgtaatgctagaaaatggttggatgct
aatatgagtcatttgttacaggacgaccgctgtgtggtaacagcacctcggaaagcgctt
tgtcccgaagatgacgatttcatggccgctctagatcgtatggtggccgagaacattcac
gatgcatacactcgcggcaaggaagtcagcaaaccacctgccgtcgatattgccatccct
tggcaggttaaggcatcgctcaaaagacctgatggatcggataaaaattttctgggcgat
tccattggaggtgaattgggaggtgccttggcagttgctgaagcttcttccgcctgtgcc
gccatcgcttcgtctcctccttcagcagtccatgacaatcctacggtgaatttcttccta
atgacgcgtaaaggcaataagccacagttcaagaatctggcagtgccttcggactctgaa
cttgcacagaacctacggaatcgagaagaggccgaaaaagcggagaaggaacgtgtgaaa
aagttgacactggatttcaatgaacgccaggaagaagaagagtttcaggatttgtacggc
ggagtaaatcgtccagctgttcacaacgtcaatcgcgatcgccgaggtcgtttccagcat
cccaaaggcgttccggacgctgagctcatatttggaggagcgagaaagaatcggtga
DBGET
integrated database retrieval system
