Daphnia pulicaria: 124320700
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Entry
124320700 CDS
T08670
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124320700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124320700
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124320700
Spliceosome [BR:
dpz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124320700
Complex C
U4/U6.U5 tri-SnRNP related factors
124320700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
SLFN-g3_helicase
DUF1178
Flavi_DEAD
nSTAND3
Reprolysin
T2SSE
Motif
Other DBs
NCBI-GeneID:
124320700
NCBI-ProteinID:
XP_046639521
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All DBs
Position
1:16777688..16781141
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AA seq
904 aa
AA seq
DB search
MAPPVNKKIKKEKMKSDSSSDDEDEKQRVRDLKERDEFSERLKLKDKDKQRNVVTVGKGF
AEAAKRLQMEAEDKASVIPKLRVESRRKYLEKRKRDKITELEADIFDDEYLFDEQQLTER
ERKDREYKKKILSLAKEHDKARELELVQRYHMPDDKREKAMPDRYVEIDDREKQPHSEQK
VWEDARMATAQWNFGARDSKQRLQKRGKIHDYDLLLDDTIDFIQTNQLAGTKGIEEQPEE
SDIQKKKMSLQDTRKSLPIFPFREDLLQAVEDHQILIVEGETGSGKTTQIPQYLYEAGYC
KDDKKVGCTQPRRVAAMSVAARVAQEMGKKLGNEVGYSIRFEDCTSERTVIKYMTDGMLL
REFLSEPDLQSYSVMIIDEAHERTLHTDILFGLIKDIARFRPDLKLLISSATLDAEKFSD
FFDEAPIFRIPGRRFPVEIFYTIAPEADYIDACVVTILQIHVTQDSGDILVFLTGQEEIE
TALESLTERTRRLGTRIKELLILPIYANLPSDMQAKIFEPTPPGARKCILATNIAETSLT
IDNIIFVIDPGFCKQNSYNARTGMESLVVVPISKASANQRAGRAGRVAAGKCFRLYTAWA
YKHELEENTVPEIQRVNLGNVVLLLKSLGINDLIHFDFLDPPPHETLALALEQLYALGAL
NHMGELTKLGRRMAEFPVDPMMAKMLLASEKYKCSEEIVTIAAMLSVNSAVFYRPKDKAI
HADTARKNFFSPGGDHFTLLNVYNQWVDTDFSTQWCFENFIQHRSMRRARDVREQLVGLM
ERVEIDMVSNKEDLVAIGKAVTAGFFYNTSRLSKTGGYKTVKHNQTVLIHPNSSMFEELP
RWLIYHELVFTTKEYVRQVIQIENSWLLEVAPHYYKAKDLEDTITRKMPKNKGKSRAELG
DHRN
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggcaccaccagtaaataaaaagatcaagaaggaaaagatgaagtctgattcaagcagt
gacgatgaagatgagaaacaacgggtcagggatttgaaggaaagagatgagttctctgaa
cgtcttaaactcaaagataaagataaacagaggaatgtggttactgtgggaaaagggttt
gctgaagctgcaaagaggcttcaaatggaggctgaagacaaagccagcgttattcccaaa
ctcagagtggaatcacgtcgaaaatatttggagaagcgaaaaagagacaagattactgaa
ttggaagcagatattttcgacgatgagtacttgttcgatgagcaacaactcacggagcgt
gaacgaaaggatcgcgagtacaagaaaaaaattcttagtcttgcgaaagaacatgacaaa
gcacgagaattggaattggttcaacgataccatatgcccgatgataagcgggaaaaagca
atgcctgataggtacgtcgagatagatgaccgtgaaaagcaacctcattccgaacaaaaa
gtttgggaagatgctcgcatggccactgctcagtggaatttcggtgccagagattcaaaa
caacgtcttcagaagagagggaaaattcatgattatgacctcttattggatgacactatt
gactttatccaaacaaatcaacttgcaggaaccaagggtattgaagaacaacctgaggaa
agcgacatccagaaaaagaaaatgtctcttcaggatacgagaaaatcgcttccaatattt
ccgtttcgcgaagacttactccaagccgttgaagaccatcagattctgatcgtggaagga
gagactggatcaggaaaaacgacacaaattccccagtatctgtacgaagcgggatactgt
aaagatgacaagaaagtcggttgtacacaaccacgtcgagttgcagccatgagtgttgct
gctcgtgtcgcccaggaaatgggcaagaaacttggtaacgaagtaggctacagcattcga
tttgaagattgcacgtcagagaggactgttatcaagtacatgactgacggtatgttgctg
cgtgagtttctctctgagcccgatttgcagagctatagtgtcatgattattgacgaagcc
cacgagcgaacactccataccgatatcctttttgggctaatcaaggatattgcacggttt
cgacctgatttgaagctgctaatttccagtgctacattggacgctgaaaagttttccgat
ttcttcgacgaagctcctatatttagaatccccggtcgaagattcccagtcgaaattttt
tacaccatagctcctgaggctgattatatcgatgcttgcgttgtcactattctacagatt
cacgtcacacaagactcgggtgacattcttgtctttcttactggtcaagaagaaattgaa
acggcactggagagtctgacggaacgtactcgaagattaggcaccaggatcaaagagttg
ctcattcttcctatctacgccaatttgccgtcagatatgcaggcaaaaattttcgagcca
acgcctcccggagcgcggaaatgcattctggctacgaatatcgcagaaacgtctttgact
attgacaacattatcttcgtcattgacccaggcttttgcaagcaaaattcctataatgcc
cgaactggcatggaatcccttgttgtcgttcctatttcgaaagcgtcggcgaatcaacga
gctggacgtgctggacgtgtagcagctggcaaatgtttccgcctatacacagcatgggcc
tacaagcacgagctcgaagagaacactgtgccagaaattcagcgagttaatttaggcaac
gtcgttctgcttctcaaatcccttggaatcaacgatttgattcactttgactttttggat
ccgcctccgcacgagactttggctttggcactggaacaactctacgctctaggagccctg
aaccacatgggcgaattgaccaagctgggcaggcggatggctgaattccccgttgatcct
atgatggcgaaaatgctcctggcatccgaaaaatacaaatgttcggaagaaatcgtcacc
attgcagccatgctctcagtcaacagtgcagtcttctatcgacccaaagataaagcaatc
catgccgacacggctcgaaagaatttcttttcgccgggtggcgaccattttaccttactc
aacgtttacaaccagtgggttgacacggatttctcgacgcaatggtgctttgaaaacttc
atccagcatcgatcaatgagacgcgcaagggacgtcagagaacagcttgtcggccttatg
gaacgagttgaaattgatatggtttctaataaagaagatttagtggctatcggcaaggcg
gttacggctggattcttctacaacacgtcgcgcctatccaagacgggcggatacaagaca
gtcaaacacaatcaaactgtgctcattcacccaaacagctcaatgtttgaggaacttcct
cgttggctcatctatcacgaacttgtatttactactaaagagtacgtgaggcaagttatt
cagattgagaacagttggcttctggaagtggctccgcactactacaaagccaaggacctg
gaagacacaattactcgtaagatgcctaaaaataagggcaaatcacgggcggagttgggt
gaccatcgaaattga
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