Daphnia pulicaria: 124320893
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Entry
124320893 CDS
T08670
Name
(RefSeq) protein HBS1-like
KO
K14416
elongation factor 1 alpha-like protein
Organism
dpz
Daphnia pulicaria
Pathway
dpz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124320893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124320893
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124320893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
MMR_HSR1
GTP_EFTU_D2
AAA_22
Motif
Other DBs
NCBI-GeneID:
124320893
NCBI-ProteinID:
XP_046639755
LinkDB
All DBs
Position
1:37740525..37744968
Genome browser
AA seq
693 aa
AA seq
DB search
MARHRNVRTMNYDEEYDGYDDVYGHSVEDDFASSPSMQHFLYDRNQEHQMSAYIQSDIPE
EEEELTPEESKNGAGVSAPPRIPPLGELEQAQLYSCLDLLRDRMGDALSEQAGINAILAA
NFDAEKALDQLLRNSVPVSLKKVSKPTIREKTVPAIQVETIRGSVTKEEKIPVKVVPTKK
VSTGFTVASNSSSVNVATESQSAKQESAVEETSRQLGFLRTPGATPRSTSPADREVTPFA
TPKSQSRSRESRLDAASEYVKERGGTKALLNLVVVGHVDAGKSTLMGHLLFRLGQVSAKQ
MHKYEQESKKLGKQSFMYAWVLDETGEERARGITMDVAQSQFETESKSITLLDAPGHRDF
IPNMIFGAAQADVALLVVDATTGEFETGFESGGQTREHALLVRSLGVSQLGVVVNKLDMV
GWSRDRFNEISARLGAFLRQAGYKEQDVFYVPVSGLSGENLTISSEPKLTEWYSGPTLLQ
AIDKFRPPERALNRPVRFVISDIFKSVVGSSGCCLAGRLESGMIQTTDKLLVMPLNEVIQ
IKNIAINDNSTGSCFAGDQVVLTVSGADLSDVSLGSVLCDPSQPIKVTSRIQARVVIFNV
DIPITKGYPVVIHYQSLSEAATITKLIAQIHKSTGEVIRKRPRCLTKQTSGLVEIEISRP
ICMELYKDYRELGRFMIRASGTTIAAGLVTSIM
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggctaggcataggaacgttcgaactatgaattatgacgaagagtacgatggttatgat
gatgtctacggccactctgttgaagatgattttgcatcatcgccgagcatgcaacacttc
ctctacgatagaaatcaagagcatcagatgtctgcctacattcagtctgacattcctgaa
gaagaagaagagttgacgccagaagaatctaaaaatggggctggtgttagtgctccacct
agaataccaccattaggagaattggaacaggcccaattgtattcatgtctggatcttctt
agagataggatgggagatgcactgtcagaacaagcaggaatcaatgcaattctagcagct
aattttgatgctgaaaaggcgcttgaccagctgttaaggaattctgttcctgtttcattg
aaaaaagtctcaaaaccaacaatcagagaaaaaacagttcctgcaattcaagtggaaaca
atcagaggatcagtgactaaagaagaaaaaatcccagtgaaagtagttcctaccaaaaag
gtttcgaccggctttacggtggcttcaaacagttccagtgtcaacgttgcaactgaaagc
caatcagccaagcaagaatcggcagtagaagagacaagtcggcagctaggtttccttcga
acgccaggggccactccaaggtctacatctcctgcagaccgagaagttacaccatttgcc
actcccaaatctcagtcgcgctcgcgagagagtcggctggacgccgccagtgaatacgtg
aaggagcgcggcggaaccaaggcgttgctcaatttagttgttgtcggacatgtcgatgcg
ggaaagtcgacgttgatgggtcacttgctattccggttgggccaggtttccgccaagcag
atgcacaaatacgagcaagagtctaagaaacttggaaagcaatcgttcatgtacgcttgg
gtacttgatgaaactggggaagaaagagcacgtggaattacaatggacgtggcccagtcg
caatttgaaacggaaagcaaatccataacccttttagatgcgcctggacatcgagacttt
attcctaatatgattttcggagcagcacaagccgatgttgccctattggttgtcgacgcc
accactggtgaatttgaaacaggatttgaaagtggcgggcaaactagggaacatgctctc
ctcgtgcgatctctcggtgtcagccagttgggagtcgtcgtcaacaagttggatatggtg
ggttggtcacgtgatcgtttcaatgaaatctcggctcgcttgggtgcctttttaagacaa
gccggctacaaagagcaggatgtattctacgttcctgtttccgggctcagcggagagaat
ctcaccatttctagcgagcccaaactcaccgagtggtacagcggaccgactttgcttcaa
gctatcgacaaatttcgaccaccggaacgtgctctaaatcgacctgttcgcttcgtgatc
agtgatatctttaaaagtgtggtcggtagctccggttgttgcttggccggtcgacttgaa
agcggaatgattcaaaccactgataaacttctagtaatgcctttaaacgaagtcatccaa
ataaaaaatatcgccatcaacgacaactcaacggggtcatgtttcgccggcgaccaagtg
gtgctgactgtgagtggtgctgatctcagtgacgtcagccttggctctgttttgtgcgac
cccagccagccaattaaagtgacttcacgcattcaagcccgtgtggtgatattcaacgtc
gacatccccatcaccaaaggctatccggtggtgattcattatcaatccctgtctgaagca
gctacgatcaccaaactaattgcccagattcacaagagcaccggtgaagtgattcgaaaa
cgacctcgatgcttaacgaaacaaaccagcggtctggtggaaattgaaatttctcgtccc
atctgcatggaactttacaaagattacagggaactgggtcgattcatgatccgggcaagc
ggtacgaccatcgccgccgggctcgtcacgagtatcatgtga
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