Daphnia pulicaria: 124326082
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Entry
124326082 CDS
T08670
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124326082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124326082
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124326082
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124326082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
PRC2_EED_ins
Baculo_PEP_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
124326082
NCBI-ProteinID:
XP_046640653
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All DBs
Position
2:10522589..10526565
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AA seq
738 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVELFEDIWQKVHNAANSNQKEKYETDLKKEIKKLQRLRD
QIKSWIQSAEIKDKSQLVENRKLIETQMERFKIVERETKTKAYSKEGLGAAQKLDPAQKE
REDISQWLNTSIENLNIQIDQFECEIESLLAAKKKKLDKDKQERLDKLKEFLERHRFHIR
KLETLLRMLDNLTVEVTQIKKIKDDIEYYIEAASTDPDFEENTYLYDDINFLDEFADVVG
TVGGDGSHEEGSPSSPGTAPSPTSSPAMNHQGSGTNTTPSSTGTGAPATTPSDADERQKR
THRSSTDDSHPPKTPSQVAPVKPAPIKAPTKPVLTTPIKSSAAAVSHSTPNNSSPSSGST
MSNHISTPTTPQVNGAALAYSVVTREDGIQSLSLGNSNNSSGHAESSPISQQQSPAVIST
AQAPAPPPPQQQQPTAVPVVVPSKLISSASVDSTGTVASSISTAPSPLPSAATPPSSSAA
ASSLPLVNGPSNKSGAESISLRAMAQHAVDQQVVQPAVPTSDSTANILYSENNINNNNNN
NNPGVVGSGRTVGTTSGQLSVPSSLVPQPPAPTGEAHIPPLLGVAPLGPVALSKEQQIQH
QSLEAAFYHMPHPSDSERLRHYLPRSPYMTPPYYPQSVPLASDSLDFFHRLSTETLFFIF
YYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITEEYEQGTYIYFDYEKWGQR
KKEGFTFEYRFLEDRDLN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgagaaaattgcaaggtgaaattgaccgctgtttgaaaaaagtaacagaa
ggtgttgaattatttgaggacatttggcaaaaggttcataatgcagccaacagcaatcaa
aaggagaagtatgaaactgatctcaagaaggagatcaagaagcttcaacggctacgagac
cagatcaaatcctggatccagtctgctgagatcaaagacaagagccaactcgtggaaaac
agaaagctcattgaaactcaaatggagaggttcaaaattgttgaacgggaaacaaagaca
aaagcatattccaaggaaggactgggtgcagctcaaaaattggatccagcccagaaagaa
agagaagacattagccagtggcttaatacttccatcgaaaacctcaatattcaaattgac
caatttgaatgtgagattgaatctttgttagcagccaagaagaaaaagctagacaaagac
aagcaagagcggctagacaagcttaaggaatttttggaaaggcataggtttcacattcga
aaactggaaaccctgttaagaatgctggacaatttgacagttgaagtcacccagataaag
aaaatcaaggatgacattgagtattacattgaagcagcctctacggacccggatttcgaa
gagaatacgtatctctatgatgatatcaacttcttggacgagtttgcggacgttgtcggt
acagttggaggtgacggtagccatgaagaaggtagtccttcttctccaggtactgctcca
tcacctacttcttctccggccatgaatcaccaaggctcaggaaccaacaccactccatct
agtacgggaacaggagcaccagcaacaaccccgagtgatgccgatgagaggcagaaacgg
acgcatcggtcttctacggacgattcgcatccacccaaaacgccctcacaggtcgcacct
gttaaacctgcacccatcaaagcgccgacgaaacctgtccttaccacaccaatcaaatct
tcggcagcggcagtatctcattcgacaccgaacaacagctcaccgagttcaggatcgacc
atgtccaaccacatttcgacacctactactcctcaagtgaacggtgctgcattagcttac
agtgtcgtgacgagagaagacggtattcagtctctgtcgctcggcaattccaataacagt
tcaggccacgccgaatcgtcacccatctcgcagcaacagtcaccagcggtgatatcgacg
gcgcaggctcctgcgccccctccaccccaacagcagcaaccgacggccgttcctgtcgtg
gtcccgtccaagttgatttcgtctgcttcggtcgattcgactggaacagtggcatcgtca
attagcaccgcaccgtcccctcttccttcagctgccacacctccttcgagttccgctgcc
gcatcttccctacccttagtcaacggcccctcgaacaaatcaggagccgagtctatctca
ttgcgggctatggcgcagcatgcggtggaccagcaggtcgtccaaccagccgttccaacc
agtgattcaacggcgaacattctttactcggaaaacaacatcaataataacaacaataac
aacaaccccggtgttgttggtagtggtagaacagtaggaacaacttctggacagctctct
gtgcccagcagtctagttccgcagccgcccgcgcccacaggcgaagctcacattccgcct
ttgctcggtgtcgctccgctcggacctgtggcgctcagtaaagaacagcagattcagcac
cagtcactggaagccgcattttatcacatgccgcacccctctgactctgaacggttgcgg
cattaccttccgagatcaccctacatgacgccgccctactatccacagtcggttccgttg
gcatccgattcgctggattttttccatcggctctcgaccgagactctctttttcatcttt
tactacttggaagggactaaagcccaatacctggccgcaaaggcgttgaagaagcagtca
tggaggtttcacaccaaatacatgatgtggttccagaggcacgaagaacctaaaactatt
accgaggagtatgaacagggcacttatatctactttgactacgagaagtggggccagagg
aaaaaggagggcttcacgttcgagtacagatttctcgaagatcgagatctcaactag
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