Daphnia pulicaria: 124327026
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Entry
124327026 CDS
T08670
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124327026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124327026
03041 Spliceosome [BR:
dpz03041
]
124327026
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124327026
Spliceosome [BR:
dpz03041
]
Complex B
Other components
Prp19-related factors
124327026
Complex C
124327026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
Mad3_BUB1_I
ARM_TT21
TPR_10
PPR
ARM_TT21_C
RPN7
DHR-2_Lobe_A
TRPM_tetra
Motif
Other DBs
NCBI-GeneID:
124327026
NCBI-ProteinID:
XP_046641787
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All DBs
Position
2:complement(711691..715121)
Genome browser
AA seq
855 aa
AA seq
DB search
MDKSIGKKTGDIVLCEEDLAYEEEILRNPYSVKHWLRYCEFKKDAPPVVVNLIYERALKE
MPGSYKLWYSYLCLRRKQTKGRCITDPLYEDANNTFERALVFMHKMPRIWMDYCKFLTLQ
QKITTTRKVFDRALRALPITQHSRIWPLYLKFVKMHPIPETAVRVFRRFLKLSTEDAEEF
VDYLKSIDRLDEAAVKLAQIVNKDSFVSKTGKSNHQLWNELCELNSKNPKQIKSLNVDAI
IRGGLRRYTDQLGQLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELNLNHMMEEIGQKPNPSEDDDIEVELRMARFEDLMDRRPLLLNSVLLRQNPHNVAEWHK
RVQLYEGKPHEVINTFTEAVQTVDPKQAIGKVHTLWVDFAKFYEKNDQIDDSRIVFEKAT
HVKYVKVDELATVWCEWAEMEIRNSHFQEALKLMHRVTTPPARKINYHDDAEQVQTRVHK
SLKIWGLYADLEESFGTFKTCKAVYDRILELKIATPQIIMNYAIFLEENNYFEEAFKAYE
RGVALFKWPNVYDIWNTYLSKFLKRYGGSKLERARDLFEQCLEGCPNKFAKTFFMLYAKL
EEEHGLARHAMNVYERATKAVPANERFDMYNMYIKKASEIYGVTKTRHIYERSIEELPDH
QAREMCLRFADLERKLGEIDRARAVYGHCSQMCDPRVAPEFWKVWKEFEIRHGNEDTMRE
MLRIKRSVQATYNTQINMMSAQMLAAATNTAEAAAASHDSMKMLDAEAEESRPPVPVAKP
LARAGSNIMFVRSETQPGSATEDIPAAAANPDEIDIDQDGDDDEEEEEATIEEQQVPRQV
FGSLKKDEEDEEEAQ
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagtatagggaagaaaactggagacattgttttgtgtgaagaagatttagcg
tatgaagaggagattctacggaacccttactctgtcaaacattggcttcgctattgcgag
ttcaaaaaggatgcccctcctgttgttgtcaatttgatttatgagagagctttgaaggaa
atgcctggcagttacaaactatggtacagttatctctgcctaagaaggaagcaaactaaa
ggtcgctgtataacagatccactgtatgaagatgccaacaacacttttgaaagagcattg
gtattcatgcacaagatgccaaggatttggatggactattgcaagtttctgactcttcaa
cagaagattaccactacaagaaaggtctttgaccgtgctctaagagccttgccaatcacc
cagcattccagaatttggcccctctacttgaagtttgttaagatgcatccaatacccgaa
acagctgttcgagttttccgtcgttttcttaaactatcgaccgaagatgcagaggaattt
gtcgattacttaaaatctattgacagacttgatgaggcagctgttaaacttgcccagatt
gtgaacaaggacagctttgtttcgaagacaggaaaatcaaaccaccaactttggaatgaa
ctgtgcgaacttaattcgaaaaatcctaagcaaattaaaagtcttaacgtggatgcaatc
attcgaggaggtcttcgacggtacactgatcaacttggccagctttggaattcccttgcc
gattactatattagaagtggtttgtttgaaagagcaagagatatttacgaagaagcgatt
cagacagttactacagtacgagacttcacacaggtgtttgatgcctatgcccagtttgaa
gagttgaatttgaatcacatgatggaagagattggtcagaaacctaatccttcagaagac
gatgatattgaagttgagttgaggatggcccgctttgaggatttaatggatcgccggccc
ttgctgttgaattctgttcttttacgtcaaaacccccataatgtcgccgagtggcataaa
cgagtccagctttatgagggcaaacctcatgaagttatcaatacttttaccgaggctgtc
cagacagtcgatccaaagcaggccattggaaaggtgcacacgctgtgggtcgactttgcc
aaattttatgagaaaaatgatcagattgacgattcacggatagttttcgaaaaagctacg
catgtgaaatacgtgaaagttgatgaactggcgactgtttggtgcgagtgggccgagatg
gagatccgaaattctcatttccaagaagctctcaaattaatgcaccgtgttacaactcct
cctgcacgcaaaattaattaccatgatgacgccgaacaagtgcaaacgcgtgttcacaag
tcactgaagatttggggtttgtacgctgatcttgaagaaagctttggtactttcaaaaca
tgcaaggccgtgtatgaccgtatcctcgagttgaaaattgcaacaccgcaaatcattatg
aactatgccatctttttggaggaaaataactactttgaagaagcttttaaagcttacgaa
cgtggcgttgctcttttcaaatggcccaacgtgtacgacatctggaacacctatctctca
aagtttttgaaacgctacggcggctcaaaattagaacgagctcgagatctctttgaacag
tgtcttgagggatgtccgaataagtttgccaagactttctttatgctctacgctaaactc
gaagaggaacacggcttagcccgtcacgctatgaacgtttacgagagagccaccaaagct
gtgccagcaaatgagcgctttgacatgtacaatatgtacataaagaaggcatccgagatt
tatggtgtgaccaagacgcgccacatctatgaacgatccatcgaagagctacccgatcac
caggctagggaaatgtgtttgcgatttgccgatttggagcgcaaattgggagaaattgac
agagcccgtgctgtatacggacattgcagccaaatgtgcgaccccagagttgcgcctgaa
ttttggaaggtttggaaagagtttgaaattcgccatggcaacgaagatacgatgcgggaa
atgcttcgaatcaaacgcagcgtgcaggcaacatataatacacagatcaatatgatgtca
gctcaaatgttagctgctgcaaccaacactgccgaagcggcggctgcttctcatgatagc
atgaaaatgctagatgcagaagctgaagaatctcgccctccagtgcctgttgccaagcct
ctggcgcgagctgggagcaacatcatgttcgtccggagtgaaactcagcctggttccgca
accgaggacatccctgctgctgctgctaaccctgacgaaatcgacattgatcaagatgga
gacgatgacgaggaagaagaggaagctaccattgaagaacagcaagttccacgtcaagtc
tttggtagcttgaaaaaggatgaagaagatgaagaagaagcccaataa
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