Daphnia pulicaria: 124327033
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Entry
124327033 CDS
T08670
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03022
Basal transcription factors
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124327033
09124 Replication and repair
03420 Nucleotide excision repair
124327033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124327033
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124327033
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124327033
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124327033
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124327033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
Terminase_5
Motif
Other DBs
NCBI-GeneID:
124327033
NCBI-ProteinID:
XP_046641799
LinkDB
All DBs
Position
2:272770..275758
Genome browser
AA seq
794 aa
AA seq
DB search
MAGGSRKYGKKDGDRYDASKKKFAGKKRKDFEDESAYDEGIPDGNEAEGVPEAAKHFIEV
EGERQGEDEYGAKDYRDLQLKPDHMSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPV
CRPEHIHEYKLTSYSLYAAVSVGLQTHDIIEYLKRLSKTAVPDGIVDFIKISTLSYGKVK
LVLKHNRYFVESQYPDVIQKLLKDPVIQECRLRHSVESSTDGLITQVQSKATSIQFGKPG
TSGEEPGEEGKQVPDDISNFYDKMDKDEDDEDDSSLQTVAFEVNQEKIEVIQKRCIQLEY
PLLAEYDFRNDTHNQDINIDLRPAAVLRPYQEKSLRKMFGNGRARSGLIVLPCGAGKSLV
GVTACCTVRKRALVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSDAKDKPHGCSILITT
FNMITHQQKRSYEADQTMKWLQEQEWGIMVLDEVHTIPARMFRRVLTIVQAHCKLGLTAT
LVREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLACKSAK
KMLLFVMNPNKFRACQFLIRYHERRNDKIIVFSDNVYALKHYALTMNKPFIYGPTSQNER
LQILQNFKLNPKVNTIFVSKVADTSFDLPDANVLIQISSHGGSRRQEAQRLGRILRAKKG
AIAEEYNAFFYTLVSQDTLEMSFSRKRQRFLVNQGYSYKVITRMAGMDQDQELNYKSKEE
QANLLQMVLTASDIDADEERVPGEIGGRPGPFGRRVGTMASMSGADDAVYMEYKRPSASN
NLSKHPLFKKYRTK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggctggggggagccgtaaatacgggaaaaaagatggagatcgttatgacgcgtccaag
aaaaaatttgctggtaaaaaacgaaaggattttgaagatgagagtgcttatgatgaaggc
ataccggatggaaatgaagctgagggtgtgccagaagcggcaaagcacttcattgaagtt
gaaggtgaaaggcaaggggaagatgaatatggagccaaagattatcgagacttgcagctt
aaaccagaccacatgtctagaccattgtgggttgctcccaatggccacatcttcctggag
tcattctcaccagtctacaaacacgctcacgactttctgattgcaataagtgaaccagtt
tgtcgtccagaacacatacatgagtacaagttgacttcttactcattgtatgctgccgtc
agtgtcgggctgcaaactcatgacatcatagagtatttaaagcgcttaagcaaaactgct
gtccctgatggaattgtagacttcataaagatctcaacactctcttacggcaaagtcaaa
ttagtgttgaagcacaatcgctattttgttgagtctcaatatccagacgtcatccaaaaa
ttgttgaaagatcctgtaattcaagaatgcagacttcggcacagtgtggaatcttcaaca
gatggactgatcactcaagttcaatcaaaagcaacgtctattcaatttggaaaacctggt
acttctggagaagaaccaggagaagaaggaaagcaagtgcctgatgacatatcgaatttt
tacgataaaatggacaaggatgaagacgacgaagatgattcttctcttcaaacggttgct
tttgaagtaaatcaagaaaaaattgaagtcattcaaaagcgatgtattcagctagaatac
cctttgttagcggaatatgattttcgcaatgacactcataatcaggacatcaacattgat
ttgagacctgcagctgtattgcggccttaccaggaaaaaagcctacgaaaaatgtttggc
aatggtcgtgctcgctctgggctcattgttttgccttgtggagctggtaaaagtttggtt
ggtgtgacagcctgttgtacagttcgaaaaagagctttagttctgtgcaattctggagtt
tcagtcgagcagtggaaagcccaatttaagatgtggtctactgctgacgatagtatgata
tgtcgttttacatctgatgcaaaggataagcctcatggatgcagcatcttgatcacaacc
tttaacatgataacacatcagcaaaaacgttcgtatgaggcagatcaaacgatgaagtgg
ctccaggagcaggaatggggtattatggtgttggacgaggtgcacactattccagctcgc
atgtttcgtcgtgttttgaccattgttcaagcccattgcaagcttggtttgacagccact
ctcgtccgcgaagatgacaagattgcagacttgaattttttgatcggaccaaagctgtac
gaggctaattggttggagctgcaaaaacgtggattcattgctcgagtacaatgcgctgaa
gtatggtgtcctatgagcccagaattctatcgcgagtatctggcctgtaaatccgcaaag
aaaatgcttctcttcgtaatgaatcctaacaagtttagagcctgtcagtttcttattcgc
taccacgagcgacgtaatgacaaaatcatcgttttttcggataatgtgtatgctcttaag
cactatgcgcttaccatgaataagccattcatttacggtccaacatctcagaacgaaagg
cttcaaattctacaaaatttcaaactgaatccgaaggtgaacacaattttcgtcagtaag
gtggctgatacttccttcgatttgcctgatgccaacgtgcttattcaaatatcctcgcac
ggtggctctcgtcgtcaagaagctcaacgattggggcgtattcttcgagccaagaaaggt
gccattgccgaagagtacaatgcgttcttctacacgctggtatcgcaagatacattggaa
atgagcttctctcgtaaacgtcagcgattcttggttaatcaaggatacagctataaagtc
atcactcgcatggcgggcatggatcaagaccaggaattgaactacaagagcaaggaagag
caagccaacctgctgcaaatggttctgacagcatcggatattgatgcagatgaagagcgt
gtacccggagaaattggaggtcgacctggtccatttggacgacgcgttggaaccatggca
tcaatgagcggtgccgatgacgcagtttatatggaatataaacgcccatcagcttcaaat
aatttatccaaacacccccttttcaagaaataccgcaccaagtaa
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