Daphnia pulicaria: 124327104
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Entry
124327104 CDS
T08670
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
dpz
Daphnia pulicaria
Pathway
dpz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124327104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124327104
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124327104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
124327104
NCBI-ProteinID:
XP_046641936
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Position
2:715278..717589
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AA seq
527 aa
AA seq
DB search
MADTVRHPDEADNSNSQFPYSSEQLPDEYGDDGKIDQDITGNGEMYEIENEDHIAIDRND
GNTEYAGEGYDPEEAAETNEEKDERQDEDQDNDDDEDDESDDDVQITIGDIKSGPAAYAG
FNVKRGTAGTTAQGLGEKSKFTVEEFEGSMAINGVPAHEFSLDSLEDKPWRKPGADITDY
FNYGFNEITWQAYCERQRRSRMESGAGVPASLGLGPPPKMMATPAQAIPISVVNENSKYA
GSVVVKKAGPPPARKMAGAIDVIGGGNLSSRRPESGVSPAPSMEEQPPEVPEAPVEKPPV
SIDFSRPPPGFPNMALPPPFGMPPPVIPPPMMLPPPPIVPDPYANEFMAGPGAPGDDYYQ
YEPTQDSQWGSSDWRGPPPMGIPLPMGMNPPGKQRRESLGTPPVPGEESRISSSSRRRRS
SRSRSPKDDREKEKEVEKDRGKDRERDRDRDRDRDRDKRDRRSDKDKERVSGRDRERDRD
RDRGERDRSDRRRRHRGSKSRSRSPTSHKRSSKRSKRDRSKSKSSSD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggccgacactgtccggcacccagatgaggcagataattctaattcacaattcccttat
tcctcggaacagttaccagatgaatacggcgatgatggaaaaatcgaccaagacatcacc
ggtaatggagaaatgtacgaaatcgaaaatgaagatcacattgccatagacagaaatgac
ggaaatacggaatacgctggagaaggctatgatccagaagaagctgcagagactaatgaa
gaaaaggatgagagacaagatgaagatcaagacaatgatgacgatgaggatgatgaaagt
gatgatgacgtacaaatcacgattggtgacataaaatctggcccagcagcttatgctggt
tttaatgtcaaaagaggaacagctggaacaacggcacaaggattgggggaaaagagcaaa
ttcactgtggaagagttcgaaggctcaatggcgattaacggtgtaccagcacatgaattt
agtttggattcgctggaagataaaccttggaggaagcctggtgctgatatcactgattat
tttaattacggtttcaatgaaataacgtggcaagcatattgtgagagacaaaggcgatcc
cgtatggagtctggggctggtgttccggctagccttggattaggacccccacccaagatg
atggcgaccccggcccaagcgattccgatatcagtggttaacgaaaattcaaaatatgcg
gggtcagtggttgtgaaaaaagcaggccctccgccagcacgcaaaatggctggtgccatt
gatgtcattggtggagggaatctatcttcacgccgtccagaatcaggcgtttcacctgct
ccttctatggaggagcaacctcccgaagtgcctgaagctcctgtggagaaacctcccgta
tcgatcgatttctcacgtcctcctcctggttttccaaatatggccctacctcctccattt
ggtatgccgccaccagtaattccaccaccaatgatgttaccaccaccacctatagtacct
gatccctatgccaatgagttcatggctggcccaggagctcctggcgacgattattaccaa
tacgaacctactcaggattcacagtggggatcttcggactggagaggaccaccacctatg
ggaataccactaccaatgggaatgaacccaccgggaaagcaaagaagagagagcctaggg
acccctcctgttcctggagaagaatctcggataagcagcagcagtcgaaggcgccgtagc
tcgcgcagtcgctcccctaaagacgaccgagaaaaagaaaaagaagtggaaaaggaccga
ggcaaagacagagaaagggatcgtgaccgcgatagagaccgagatcgcgacaaacgggat
cgacgctcggataaggacaaagagcgtgtaagtggccgtgaccgggaaagagatcgtgat
cgtgaccgaggagaaagagaccgtagtgatcgtagacgtcgtcacagaggcagtaaaagt
cggagtcggagtcccacttctcataagcgttcctccaagcgctcaaagagggacagaagt
aaaagcaaaagctcgtctgattag
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