Daphnia pulicaria: 124327255
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Entry
124327255 CDS
T08670
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124327255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124327255
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124327255
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
124327255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
124327255
NCBI-ProteinID:
XP_046642197
LinkDB
All DBs
Position
2:1443403..1444981
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AA seq
290 aa
AA seq
DB search
MAEILLSEAEKAFIHHGVQDDLRCDGRTRLDYRPIILETGLVSNASGSARLRLANSDILV
GVKVELASPLPDKPKEGRLEFFVDCSANATPEFEGRGGEDLANEICRFLQRSYASGDTIN
LSELSVLTGQQCWVLYVDILILECGGNLYDAVSLAVKSALYATQIPSIKVATMDGDQPEL
ELSDDPYDTKRLNTENIPCVVTLMKIGNHYLVDPTPEEECCSSSGIVVAISGNKKITAVR
KIGSGSLHPDSLVSMLKTGSEVGAVVNTILMKKLLEEETLEVSQKVGFMR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatacttttaagcgaagctgagaaagcattcattcatcatggtgtccaggat
gatttacgatgtgatggtagaacaaggctggattatcgccctataattcttgaaactgga
ttagtttcaaatgccagtggatcggcaaggctgagacttgcaaactctgatattcttgtt
ggagttaaagtagagctagcctcccctttacctgataagcccaaagaaggaaggctggag
ttctttgtggattgctctgcaaatgcaacgccagaatttgaagggagaggtggagaagat
ctggcaaatgaaatttgtagattccttcaaagatcttatgcttcaggtgatacaattaat
ttatctgaactttctgtcttgacaggacagcaatgttgggtcttgtatgttgacatattg
attcttgaatgtggagggaacctttatgatgcagtttcattggctgtgaaatcggctctt
tatgcaacacaaattccttctattaaagtagcaactatggacggggatcaacctgaactg
gagctctctgatgatccttatgataccaagagactgaacacagagaacattccttgtgta
gtgactttgatgaagattggaaaccattacctagtagatccaacaccagaagaagaatgc
tgcagctcttctggtattgttgtggcgatatcaggcaataaaaaaattactgccgttagg
aaaattggctccggaagtttgcatccagacagcctggtgtcaatgctcaagacgggaagt
gaagtaggcgcggtggtcaacacaattttgatgaaaaagctcctagaagaagaaacgttg
gaagtatcccaaaaagttggcttcatgcggtaa
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