Daphnia pulicaria: 124327499
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Entry
124327499 CDS
T08670
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03020
RNA polymerase
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124327499
09124 Replication and repair
03420 Nucleotide excision repair
124327499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124327499
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124327499
Enzymes [BR:
dpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124327499
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124327499
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124327499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
124327499
NCBI-ProteinID:
XP_046642396
LinkDB
All DBs
Position
2:3434099..3440641
Genome browser
AA seq
1895 aa
AA seq
DB search
MGTLGSDSKATIRLVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQG
VIDRSARCQTCAGNMNECPGHFGHIDLAKPVYHIGFIQKTMKILRCVCFYCSKLLVSPNN
PKIKEILVKSKGQPRKRMAHVYDLCKGKNICEGGDEIDIGKDEDISKEGKKGVGHGGCGR
YQPTIRRQGLEMTGEWKHVNEDSQEKKIVLTAERVWEIFKHISDEECAILGMDPKYARPD
WMIVTCLPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNELQRNEQSGAAAHIIAEN
IKMLQFHVATMVDNDSPGLPRAQQKSGRPIKSVKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIEKMQELVQRGNSQYPGAKYIIRENGDR
IDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLCAVR
KMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPRPQWTGKQLFTLIIPGNVNMIRTH
STHPDDEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCG
RFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQKSHNDELE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSAESVEFQTM
PTVKLSNKAFEKKFKFEPSNERYLRRIFNEEITRELISSAEVITEIEHEWEQLDKDREAL
RQIFPTGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGE
DKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGEIETRFQQAQAQPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKNPKAPSLTVFLTGA
AARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTR
ISPWLLRIELDRKRMTDKRLTMEQIAEKVNAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD
SKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIESIGKVYMHLPQTDQKKRIVVTEAG
EFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKSVEKEMNTVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLEAAGHA
EVDPLRGVSENIILGQLPRMGTGCFDLLLDAEKCKQGIEIPLSIGAGMGTGMFFGSAATP
MAGMSPQMTPWNQVATPAYGSVWSPGLGSGMTPGGPAFSPSVASDASGLSPGYSPAWSPQ
PGSPGSPGPGMSPYIPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYS
PTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSP
TYSPSSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSP
SSPQYSPRSPAYSPSSPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPK
YSPTSPRYSPASPKYSPTSPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA
PTGYSPTSPSYSPTSPTYESDSEREKEDRRKRSRR
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgggtactttaggatcagactcgaaagccaccatccggctggtgaagcgggttcaattt
ggcatcttgagtccagatgaaatccgaaggatgtctgtcacagaaggtggcatcaaatat
cctgagatttatgaaggtggcaagcctaaattgggcgggctcatggatcccagacaggga
gtcattgatcggtcagcaaggtgccagacttgtgctggaaacatgaatgaatgcccagga
cattttggccacatcgatcttgctaaaccagtctatcacattgggtttattcagaagaca
atgaaaattcttcgctgtgtgtgtttctactgctcaaaacttctggtgagccccaataat
ccaaaaatcaaggagattttggtaaaatccaaaggccaacctcgtaaacgtatggcccat
gtgtatgatctctgcaaaggcaaaaacatctgtgaaggtggtgatgaaatcgatattggc
aaagatgaagacatatcaaaagaagggaaaaaaggggtcggtcatggtggatgtggtcgt
tatcagcctacaattcgtcgtcaaggcttggagatgactggcgaatggaaacatgtaaat
gaagactcgcaagaaaagaagatagttttgactgctgaacgtgtttgggagattttcaaa
cacatttctgacgaagagtgtgcaatcctcggtatggatcctaaatatgctcgtcctgat
tggatgatcgtcacttgcttgcctgtacctccacttgccgttcgtccggctgttgtgatg
catggttcagcccgtaaccaagacgatcttacacacaaactggccgatattgttaaagct
aacaatgagctgcaacgcaacgaacaatctggcgctgcggctcacatcatcgctgagaat
attaaaatgcttcagtttcacgttgccacaatggtagataacgactctcctggacttcct
cgtgctcagcagaaatcgggtcgtccaatcaaatccgtcaaagctcgtttgaagggaaag
gaagggcgtattcgaggtaacttgatgggaaagcgtgttgacttttcggctcgtactgta
attacgcctgatcccaatctgcgtatcgaccaagtcggcgtgccacgaagtatcgcacaa
aacatgaccttccctgaaatcgtgacgcctttcaacattgaaaagatgcaagaattggtc
cagcgaggtaattcgcagtatcctggagccaagtacatcattcgtgaaaacggcgaccgt
atcgatctgagatttcatcccaagtcctctgatcttcatcttcaatgtggttacaaagta
gaacgacacattcgcgacggcgatctcgtcgttttcaatcgacagcctactttgcacaaa
atgtctatgatgggacatcgtgtcaaagtgctcccctggtcaacgtttcgcatgaacctc
agttgcacgtctccctacaacgccgattttgatggtgatgagatgaacttacacgttcct
caaagtatggagacgcgtgctgaagttgaaaacattcacgtcactccacgccagatcatc
acaccccaggccaataaacctgtcatgggtattgtgcaagacacactgtgcgctgttcgc
aaaatgacaaagcgcgacgtgttcctcgagaaagagcagatgatgaatttactaatgttt
ctccccacttgggatggcaagatgcctcagccagccattctcaaaccgagacctcagtgg
acaggcaagcagctgttcactctcatcattccgggaaacgtcaacatgattcgaacgcat
tctacccatcctgatgatgaagacgaaggcccctacaagtggatctctcctggtgacacc
aaagtcatggtagaaaacggcgagttggtgatgggcattctatgtaaaaagacgctcggt
gcctctgccgcctctctgctgcacattattttcatggaattgggtcacgaagtatgcggt
cgattctacggcaacattcaaacggtcatcaacaactggttgttatacgagggtcacagc
atcggtattggagacaccatcgccgatccccagacgtacttggacattcaggccaccatc
aaaaaggccaaagaagacgtgatagaggtcattcaaaagtctcacaatgatgagcttgaa
cccacacctggtaacactctacgacagacttttgaaaatcaagtaaatcgtatcctcaac
gacgcccgagacaaaactggtggttcagctaagaagtctttgacggagtacaataacctc
aaggccatggtggtagctggctccaagggttccaatattaacatctctcaggtcattgcc
tgcgtcggtcagcagaacgtcgagggtaaacgaattccctttggattccgcaagaggact
ttgccccacttcatcaaagacgattacggtcccgaatctagaggtttcgtcgaaaattca
taccttgccggcttgacaccgtccgagttttacttccacgctatgggtggtcgtgaaggt
ctcatcgacacagccgtcaagacagccgaaactggttacattcagcgacgtctcatcaaa
gccatggagtctgtgatggtccactacgacggcacagtccgtaactcggttggccagttg
attcagcttcgttatggagaagacgggctctctgctgaatccgtcgaatttcagacgatg
ccaaccgtcaagctttcaaataaagcatttgaaaagaaattcaagtttgaaccaagcaac
gagcgctatcttcgacgcatctttaatgaagaaatcacccgtgaattgatcagtagcgcg
gaagtcatcaccgaaatcgaacacgaatgggagcagctggacaaagatcgcgaggctcta
cgtcaaattttccctactggcgagaacaaagtggtgttgccttgtaacttgcagcgcatg
atttggaacgtccaaaagattttccatatcaacaaacgagcaccgacagatttgagtcca
cttcgtgttatccaaggtgttcgagacctgctagccaaatgcgtcattgtcgttggcgaa
gacaaattgagcatccaagccaatcagaacgccacgctcttgttccagtgcctagttcgc
tctacattgtgttccaagcgactagctgaagaatatcgcctttcatcggaagcctttgaa
tggctcatcggcgagatcgaaacccgtttccagcaagcgcaagctcaacctggtgaaatg
gtgggagcactcgcagcccagtctctcggtgaacctgccactcaaatgacgctcaacact
ttccattttgctggtgtgtcatccaagaacgtaacactcggtgtacctcgtcttaaggaa
attatcaacatcagtaagaatccgaaagccccctctctgacggtcttcttgacgggagca
gcagcacgtgatgccgagaaagctaaaaacgttttgtgtcggcttgagcacacgacgctg
cgaaaggtcacggccaacacagccatctactacgatccagatccgcagaacacggtcatc
tcggaagatcaggaattcgtcaatgtctactatgagatgcccgatttcgaccctactcga
atctctccctggttgttgcgtatcgaacttgatcgaaagcgtatgacggacaagcggttg
accatggagcagattgccgaaaaagtcaatgccgggtttggtgacgatcttaactgcatc
ttcaacgacgacaacgccgaaaagttggtccttcggattcgcatcatgaatagtgacgac
agcaaattcagcgaggaagaagaacaagttgacaagatggaagatgatatgttcttgcgc
tgtatcgaagccaacatgctgtctgacatgacattgcagggcattgaatccatcgggaaa
gtgtacatgcatttgccacaaaccgaccagaagaaacgaattgtcgtcacagaggccggt
gagtttaaggccatcgccgaatggctcctcgaaacggacggtacgcaattgatgagagtg
ttgagcgaacgtgatgtcgaccctgttcgtacctattcaaacgacatttgtgaaattttt
gcggtacttggtatcgaggctgttcgtaaatcagtcgagaaagaaatgaacactgttctt
caattctacggcctttacgtcaactatcgtcatctggctcttctttgcgacgtcatgact
gccaagggtcacttgatggccatcacccgtcacggcatcaacagacaggatactggtgcg
ttgatgagatgttccttcgaagaaactgtggacgtgctactggaagccgctggtcatgcc
gaagtcgaccccctacgtggtgtgtccgaaaatatcattttaggacagctaccacgtatg
ggtacagggtgcttcgacctactactcgatgctgaaaagtgcaaacagggaattgaaatt
ccgcttagtatcggtgctggaatgggcacgggcatgttcttcggcagcgccgctactcct
atggcaggcatgagccctcagatgacgccatggaatcaagtggccacaccggcctatgga
tccgtctggtcgcctggtcttggcagtggcatgactccaggaggtccagcattctctccg
tcggtggcaagtgatgctagcggtctttcacctggctattctccagcttggtctccacaa
ccaggaagtccaggctcacctggtccgggtatgagtccttacatccctagtccgggaatg
tctccttcttactcgccttcgtcgcctgcttatgcacccacgagcccatccatgacgcca
tcgagcccgtcttattctccaacgagtccgtcgtacagtccaactagcccgaattacagt
ccgaccagtcctggctattcaccaacatcaccgagctattcgccgaccagtccgagttac
tcaccgacgtcgccgagctacagtcctacgtctccgacttattcgccgactagtcccagt
tactctccgaccagtcctagttactctcctacctcgccgagttacagcccgacatccccg
acttattcaccatcgagtccgtcttacagtcctagctcgcctagctattcaccaaccagc
ccgagctactctccaacaagtccgagctactcgccgacgagtcccagttactcgccgagt
tcccccagctacacgccagcgtctccaagctacagcccgacgagtcccagttactcgcct
agctctccacagtactcgccacgcagtccggcgtattcaccaagcagcccgaaatattcg
ccgacatcgccctcttattccccgggttctccacagtataccccagcgtcgcccaagtat
tcgccgacgtcaccaacttattctccaacttctccggcgtactctccaagcagtccaaag
tactcgcctacgtctccacgttattcgccggcctcgcccaagtactcgccaacttcaccg
agttacagtccggccagcccagcatactcgccgagcagtcccaactactctccaacttca
ccgtcatattcacccgcctcccctaaatattctccaacgtcccctacctattctcccgca
cccacgggctattcgccaacttcgccttcttattcgcccaccagcccaacttatgaatcc
gactctgaaagagagaaggaagatcgtcgtaaacgttcgaggcgctag
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integrated database retrieval system
