Daphnia pulicaria: 124328346
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Entry
124328346 CDS
T08670
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
dpz03015
mRNA surveillance pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124328346
09122 Translation
03013 Nucleocytoplasmic transport
124328346
03015 mRNA surveillance pathway
124328346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124328346
03041 Spliceosome [BR:
dpz03041
]
124328346
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124328346
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124328346
Spliceosome [BR:
dpz03041
]
Complex C
Other components
EJC/TREX
124328346
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124328346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_19
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
124328346
NCBI-ProteinID:
XP_046643054
LinkDB
All DBs
Position
3:7328174..7331388
Genome browser
AA seq
425 aa
AA seq
DB search
MADNEDLLDYEDEEATEQVAVEGAGDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVENQVSVLVLCHT
RELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCPHIVVGTPGRILALVRS
KKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVVIFVKSIQRCMA
LCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVATDLFGRGMDIERVNIVFNY
DMPENSDSYLHRVARAGRFGTKGLGITFVSDENDAKVLNDVQERFDVSITPLPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgaagatcttttggattacgaagatgaggaggcgacggaacaagtagcc
gttgaaggagctggagatgccccagcgaagaaagaagttaaaggcacatacgtatccatt
cacagctctggttttcgagattttctgctcaagccggaaattttgagagctatcgttgac
tgtggttttgaacatccttctgaagttcagcatgagtgtattcctcaggctgttttggga
atggatgtcttgtgtcaagccaaatctggtatgggtaagactgctgttttcgtattggcc
accctccaacagttggaaatggtggaaaatcaggtttctgttcttgtcctgtgccataca
cgagagctagctttccagatctccaaggaatatgaacgtttttccaagtacatgactacc
atcaaggttggtgtattctttggtggtttaaatattgccaaagatgagcaaactttgaaa
tcaaattgccctcacattgtggttggaacccctggtcgtatcctggcgctggtccgctcg
aagaaactaaacctccgcacacttaagcacttcgttcttgacgaatgtgacaaaatgctt
gaagctctagacatgcgtcgagacgtgcaggagattttccgcaacacacctcatgaaaaa
caagtgatgatgttcagcgccacgctgagcaaggagatccgtcctgtctgcaaaaagttt
atgcaagatccaatggaagtatacgttgacgacgagtccaaactcactctgcacggtctc
cagcagcactatgtcaaactaaaggacaacgagaagaaccgaaaattatttgagctgctt
gacgtacttgagtttaaccaggtcgttatcttcgtcaaatccattcagcgttgtatggcg
ctctgccagttgctaggcgagcaaaacttccctgccatcgccattcaccgtagcatgact
caggaagaacgtttgtcgcgttaccaacagttcaaagatttcaaaaagcgaattttggta
gctacagatttgttcggtcgtggcatggacattgaacgtgtcaatatcgtttttaactac
gacatgcctgaaaactcagactcgtacctgcatcgtgtcgctcgcgctggtcgttttgga
actaaaggattgggaatcacatttgtaagtgatgagaacgatgctaaagttttgaatgac
gttcaagaacgtttcgacgttagcatcacaccgttgccagatgagattgatttgtcatcc
tatattgagggacgttaa
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