Daphnia pulicaria: 124328987
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Entry
124328987 CDS
T08670
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124328987
09122 Translation
03013 Nucleocytoplasmic transport
124328987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124328987
03041 Spliceosome [BR:
dpz03041
]
124328987
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124328987
Spliceosome [BR:
dpz03041
]
Complex C
Other components
EJC/TREX
124328987
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124328987
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
124328987
NCBI-ProteinID:
XP_046643808
LinkDB
All DBs
Position
3
Genome browser
AA seq
1432 aa
AA seq
DB search
MASLISQEVWKTWESHGHVEFVKLLESWIGTDNNSQHIPSIGSKDLFRAIYEFLWQAIKG
GIKRELVLSTIGDILVLHGDLASLTLDVLNVIDHETLVNENNDERQKLCSMLKELENWLS
DSMIKERLEIDTLQDCSLLKTKKIFYSRFIKVKTKLFYKQQKFNLLREENEGYAKLITEL
NQEIDDTITPLYILQVVQSLIGCFNLDPNRVLDVIMESFECRPQLHSRLFVPLIRSYMSD
SLTLCEVLGFKFTSFDPSSTPNSLFVITALLLQHGVIHLEDIYRWLTPKDSEIDESAAKE
LADAKEYARRMNIIAVPKEDDKIEELIEERAPYNQKFGLCEALLSVGAWEQASTLLKRHP
EFFVTSYRPISSSICKLVDYVIEPVYRTRCCISPKLSGKPVLSVGVWNFPKTAKEMKELR
ETAFPMLLSLGPHLYNDPVLLHKLIRLCNTALDDCGLNSSKKLPQDLDSLYFDVLTLFDV
VILPSLALMESNCCVAEEIWNVLKKLPYEHRYRLYGLWKNDTFQSHSLLIRRKVDCVKRI
KYIMKRVSKDNVKPTGRVLGKLSHSCPGFLFDYILSQIQIYDNLIGPVVDSLKYLTNLSY
DVLGYCVLEALSNPDKERTNHDGTTISMWLTALSAFCGAIYKKYNIDLTGLLQYVANQLK
AQKSLDLLILQEMVHKMGGIEASEEMTKEHMEAMQGGELLRAEAAHFGQVRVTKKAAQRL
KETLLESNLAIPLCLLIAQQRNCVVYRETENNHLKLVGKLYDQCQDTLVQLGTFLALNMS
VDDYVRRLPQLGSLLSDYHIHADVAFFLARPMFAHSINSKYDELRRAEKNSKNLLPAQKT
QKYLEAVRLVMTPICESVRPLCAARVWEDLSPQFFATFWSLTVYDLSVPNAAYEREVQRL
KVAIQQTNENRDLPASKRKKELDRCTALMDKLLEEEKKQKDHNERIMARLTQEKDSWFLC
RSAKLAKTETITQFLQLCLFPRCVFTATDALFCARFVQLMHNLKTPNFSTLICYDRIFCD
ITYTVTSCTENEANRYGRFLCAMLETVMHWHSSKKIFDEECANYPGFVTKFRVGNQPSEN
NDHVDFENYRHVVHKWHHKIAKALVVCLESKDYVQIRNALIVLIRILPFFPVITPLVGVI
DRNVEVVRSEQRDKRQDLSAMAISYSGQLKNKKTSIPEYEFHLVTRKPVTKTTPQSTNSL
VVAANPGAQPENGVVKHEGVNGVEKASTNLHDTPTSTPSESQSSTPVAVGLKEIKKEKEI
RETKDKVKEERIKGEKDRHKESIEKREEIPDRTREKRIKERKEDREDRPHSGKLDREDEW
MERDREDRKERRNIQETEEERRERKGERKRVDKDRVLEDVLMDVKRRKEDEREKVNLTVR
SPRHGNGSPSDGNADRRGHNRESPLSREASDRSFDRADRTERARRSTDSKRR
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgttaatttcccaagaagtatggaaaacgtgggaatcacatggacacgttgaa
tttgtgaaactgctggaaagctggattggcaccgataacaatagtcaacatattccttca
attgggagtaaagatttgtttcgtgctatatacgagttcttgtggcaagccatcaaaggt
ggaataaaaagagaactagttttatcaaccattggagatattctggttttgcatggtgat
ctagcatcgttgacactagatgttctcaatgttattgaccatgaaacgttggttaatgag
aataatgatgagcgtcaaaagttgtgcagcatgctaaaagaactggaaaactggctaagt
gattcaatgattaaggaacgcttagagattgacacattacaagattgcagtttactgaag
acaaagaagatattttactcccgtttcatcaaagtaaagacaaaattattttacaagcag
cagaagtttaatcttttacgggaggagaatgaaggctatgcaaaactaataactgaactc
aatcaagagattgatgacaccatcactccactctacattttacaagttgtacagtcttta
attggttgcttcaacttggatccgaatcgggtgttagatgtgattatggaatcatttgaa
tgtcggccgcagcttcacagtcgtctttttgttccactgattcgctcgtacatgtcagat
tcgttgactttgtgtgaagtcttagggttcaagtttacttcattcgacccgtcttctaca
ccaaactctcttttcgtcatcactgctcttttattgcagcatggagtcattcatcttgaa
gatatttatcgttggcttacgcctaaagatagcgaaatcgacgaatccgccgctaaagaa
ttagcagacgcaaaagagtatgctcgtcgaatgaatatcatcgctgttccaaaagaagac
gacaaaattgaagaattgattgaagaaagggcaccttataatcagaaatttggactgtgt
gaagctcttctttcagtgggagcttgggaacaagcgtctactcttcttaaacgtcaccca
gagtttttcgtcacatcttatcgacccatctcgagcagtatctgcaaactggtcgactac
gtaattgaaccggtgtatcgcactcgatgctgcatatctccaaaactttcgggcaaacca
gttttatctgtcggtgtatggaacttccccaagacagccaaggaaatgaaggagttgaga
gaaactgctttccccatgctactctctttgggaccccatttgtataacgatcctgtcctc
ctgcacaagttaatccgtttgtgcaatactgcgttagatgattgtggcttgaacagttca
aagaaacttccgcaagacctggattcgctgtactttgacgttcttacactgtttgatgtt
gtaatattgccatcactcgctctcatggaatcgaattgttgtgtagcagaagaaatctgg
aatgttttgaagaaattgccttatgagcaccgttatcgtctgtatggcctgtggaagaac
gacacgtttcagagccattctttgctgatccgccgcaaagtagactgcgttaaacgcatc
aagtacatcatgaagcgtgtgagcaaggataacgtcaagcccacgggtcgagtgcttggc
aagcttagtcacagctgccctggctttctttttgactacattttgtcccaaattcaaatc
tacgacaacctgattggccctgttgtggattcactcaagtacctcacaaacctatcgtat
gatgttcttggttattgcgttttggaagcactttcgaacccagacaaggagcgcaccaac
catgatggaactaccatctctatgtggctgacggctctttccgccttttgtggagccatt
tacaagaaatacaacatagatttgactggacttctccaatacgttgccaatcaactaaag
gcgcaaaagagcctagatcttcttattcttcaggaaatggtgcataaaatggggggcatc
gaagcgtccgaggaaatgacaaaggaacacatggaagcaatgcaaggcggtgaactatta
agagctgaagctgctcattttggacaggttcgggttaccaagaaagctgcccagcgttta
aaggaaacattgctcgaatccaatttggccattcccctctgtcttcttatcgcacagcag
cgcaattgcgttgtttatcgagaaacagagaataatcatctaaagttggttggtaaacta
tatgaccaatgtcaagatacgctcgttcagcttggaacattcttggctttgaatatgagt
gtcgacgactatgttagacgccttccacaattaggatcattgctctccgactaccacatc
catgctgatgtcgcattttttctggcgcgaccaatgtttgctcattcgatcaattccaaa
tacgatgaattgcggcgtgctgaaaagaattcaaagaatttacttccggcccagaagact
caaaagtatttagaggctgtacgattggtcatgactcccatttgtgaatcggttcgtcct
ttgtgcgcggccagagtttgggaagatctatctcctcaattttttgccactttttggtcg
ctgacggtctacgatttgtcagtaccaaatgctgcgtacgaacgtgaagtgcaacgcctg
aaggtagccattcaacagacaaatgaaaatcgtgatctgccagccagtaaacggaagaaa
gagttggatcgctgtacggctttgatggacaaacttctggaagaagaaaagaaacagaaa
gatcacaatgaacgtatcatggcgagattaacacaagaaaaagacagctggtttctctgt
cgatcggctaaattagcaaaaacggagacgatcacccagtttcttcaactctgccttttt
cctcgatgcgttttcaccgcgacagatgccttattttgcgctcgctttgtacagcttatg
cacaatttgaaaacaccaaacttttcaacgctgatttgctacgatcgcatcttttgtgat
ataacatacactgtgacttcttgtacggaaaacgaggcaaatcgttatggtcgctttttg
tgtgccatgctcgaaactgtaatgcattggcactcaagcaagaaaatatttgacgaagag
tgtgccaattatcctggattcgttaccaaatttcgcgtcggcaaccagccttcggaaaac
aacgatcacgttgattttgaaaactatcgtcatgttgttcacaagtggcaccacaagatt
gccaaagcgctagttgtatgtcttgaatcaaaagactatgtccagattcgaaatgcactg
atcgtcctaatacgcatcttgccattcttccccgttatcacgcctcttgtcggggtgatt
gatcgaaatgtcgaagtagtacgcagtgagcaacgagacaagcgacaggatttatcagcg
atggctatttcatatagtggtcaattaaagaacaaaaaaacgtcaattccagaatatgaa
ttccatctggtgacgaggaaacctgtaactaaaacaactcctcaaagtaccaattcactt
gttgtggcagcaaatcctggtgctcaacctgagaatggagttgttaagcatgaaggagta
aatggggtggaaaaagcttcaacaaatttgcatgatactcctacctctactccaagcgaa
tctcagtcgagtactccagttgctgttggcctcaaggagattaaaaaagaaaaagaaata
agagagacaaaggataaagtaaaggaagagagaataaaaggagagaaagatcggcacaaa
gaatcgattgaaaaacgagaagaaattcctgatcgtacgagagagaagaggataaaagaa
cggaaagaagatagagaagataggcctcattcgggcaagcttgatcgtgaggatgaatgg
atggagcgtgacagagaagaccgcaaggaacgacgtaatatccaagaaaccgaggaagaa
cgtcgtgaaaggaaaggcgagcgtaaaagggtagacaaagatcgggtgctagaggatgtt
ttgatggatgtcaaacgtcgaaaggaggacgaacgagaaaaagttaatttaacagtaaga
tccccaaggcatggaaacggaagcccctctgatggaaacgctgatagacgaggacacaac
agagaatcacctctttcacgagaagcatcggatcgctcatttgaccgcgcagatagaaca
gaacgagcccgacgctccacggacagcaaacggagatga
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