Daphnia pulicaria: 124329002
Help
Entry
124329002 CDS
T08670
Name
(RefSeq) ubiquitin conjugation factor E4 B-like
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz04120
Ubiquitin mediated proteolysis
dpz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124329002
04120 Ubiquitin mediated proteolysis
124329002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpz04121
]
124329002
Enzymes [BR:
dpz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124329002
Ubiquitin system [BR:
dpz04121
]
Ubiquitin ligases (E3)
U-box type E3
124329002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
124329002
NCBI-ProteinID:
XP_046643846
LinkDB
All DBs
Position
3:complement(8256444..8260460)
Genome browser
AA seq
1072 aa
AA seq
DB search
MSNMSELTQEEIRQRRLARLAVMSTGVAPMSNPSLSSASTSSQPSNAIFMENVSMLYTPS
TPVKNYPMDIDGTTPRKIEAMDMDGATPRKIEAMDTDEPATGTPSKVQSNADTLCTEDFL
NTTVTKILCVSRKPEKSCIVLSAIWPNNPLVTSVSFVNNHYILETVGDMIMESLDIIMHS
LDKPNQLFQEGSEINCLQYLIDCYTRMEEHMKKYSKKCSISSVKELLVKIKTELCAALAL
LLEGFLTEPIKKDYYNTLYEHLKRHSLPSEFFYELVHHLESDYVRFTKIFSPLLLVIRKE
SQQSSVSDSSHTAALQVLSDLCECRTGVNSSTRPFCNLMIKMGNWLVEPLTEATGREFAK
FTFLGPFLCTSLFAEDDVRIADKLKTTANESRPIVSSLQQEVELTRNLLHKVFYALLANS
GSREATLQWIAVALKRNEKRSMINVESRLVAGDGFFLNLAAVMHQLSLKIKLDKVDVFYP
FHPQSRISNSVANETKIRVNSQESQQWVEQLNQPDSGHIWQECKFPTECWFMTLHAQHLA
YLPAARRHQRRMRALKDYQKLVDEMQNSEAEWSQTPAARRNRELIAMWQEQVKKLLLSKP
CAEAALMDEKLISNYMHFNSMAAELEMQTLCPEIMFPTNNLTLPSKATPLFANYPEWYVE
DIAEFLLLALQHMPQIVARTVDQMVMTWLLTLVCSAHCFNNPYLVAKLVEVLFMMNPSVQ
PRTETLHERLLTHKISQSALPPSLMKFYADVESTGAASEFYDKFTIRFHISIILKSLWQS
PIHRETVIQELKSGKQFVKFINMLMNDTTFLLDESLESLRRIHEVQEAMENRSTWDQQPE
EQKETRLRQLSTDERMCKSYLTLARETVDMLHYLTQHVPDPFLRPELIDRLAAMLNFNLQ
QLCGPKCKHFKVKNADNYGWEPRRVLDQLTDIYLHLDSDVFAQALAADERSFRFELFEEA
AVRLERALIKAPLQIAHWRELSAKAQRIVLQNQKRELDFSDAPEEFRDPLMDTLMDDPVL
LPSGKVMDRAVILRHLLNSSTDPFNRQPLTEDMLMPVEDLKLRIVAWKRQKE
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacatgagtgaactaactcaagaagagatacgccagcgaaggttggcccgcctt
gcagtgatgtccactggagttgctccaatgagcaaccctagtttgtcttcagcctcaact
tcatcacaaccaagcaatgctattttcatggaaaatgtgtcaatgctatacactccctcc
actcctgttaaaaattatccaatggatattgatggtacaactccacgaaaaattgaagcc
atggacatggacggtgcaacaccacgcaagattgaagccatggacactgatgaaccagct
acaggaactccatctaaagtccaatccaatgctgatactttgtgtactgaggacttcctt
aacacaactgttacaaaaattctttgtgtgtcacgaaaaccagagaagagttgtattgtt
ttatctgccatctggccaaacaatcctcttgtgacgagtgtaagctttgtgaacaatcac
tatattttggagacagttggcgacatgataatggaatccttagatatcatcatgcattct
ctggataagccaaaccagttatttcaagaaggctctgaaatcaactgtcttcagtatttg
attgactgttatacaaggatggaagaacatatgaagaaatattccaagaagtgcagtatt
tcatcagtaaaggagctcctggtgaaaatcaagactgaattgtgtgctgctcttgcccta
ttattggaaggttttttaacagagccaatcaagaaggattattacaacaccctgtatgaa
cacctgaagagacacagtttaccatccgaatttttctatgaattggttcatcatcttgag
tcagattatgtccggtttaccaaaatattctcaccattacttctagttatacggaaggaa
tctcaacagagctcagtctccgatagctcgcataccgcagccctacaagtcctctcagat
ttgtgcgagtgtcgaacaggcgtcaactcctctactcgtccgttttgtaatctcatgatt
aagatggggaattggcttgtagagccacttacagaggcaacgggtcgtgagtttgcgaag
tttactttccttgggccgttcctgtgtacatcacttttcgcagaagatgacgtacgaatc
gccgataaactgaaaactaccgcgaatgaatcacgaccaatcgtttctagccttcaacaa
gaggtggaattgacacgcaatcttcttcacaaggtgttttatgcgcttttggcaaacagt
ggatcgcgtgaggccacattacagtggatcgcagttgcactcaaacgaaacgaaaagcgt
tcaatgatcaatgttgaatcgcgacttgttgctggtgacggattttttctcaatcttgct
gctgttatgcatcagctctcactcaaaatcaagcttgacaaagtggatgtattttatccg
ttccacccacagagtcgtattagcaatagtgtggccaatgaaaccaaaattagagtgaat
tcacaagaaagccaacagtgggtcgagcaactgaatcagccagattctggacacatttgg
caggagtgtaaattccctactgaatgttggtttatgacactgcatgcccagcatttagca
tatttgccggccgcaagacgacatcagcggaggatgcgtgctcttaaagactatcaaaaa
ctcgttgacgaaatgcaaaattcggaagcagaatggagtcaaactccagcagcccgccga
aatagggagcttattgccatgtggcaagaacaggtgaaaaagcttttattaagcaaacct
tgcgccgaagctgcgttgatggacgaaaaactcatcagcaattacatgcattttaacagc
atggccgcagaattggaaatgcagaccctctgtccagaaattatgtttcccacgaataac
ttaactcttccatctaaagccacacctctttttgcaaactacccagagtggtacgtcgaa
gatatagccgaatttcttttacttgccctgcagcacatgcctcagattgttgctcgtacg
gtggatcagatggtgatgacctggttgctcacgctggtctgttcagctcattgtttcaac
aatccttatctggtggctaagttagttgaagtgctcttcatgatgaatccgtcagtccag
cctcgtacggaaacgttacatgagcgattgctgactcataaaatttcacaatcagcgtta
cccccttctctgatgaagttctacgcagatgttgagtccaccggagcagcatcagagttt
tatgacaagtttacaatccgatttcacatcagcattatactcaagagtttgtggcaaagt
ccgatccaccgagaaactgttatacaggaactcaaatcaggcaaacagtttgtcaaattt
atcaatatgctgatgaacgacaccactttccttttggatgaaagccttgagtcactacga
aggatccatgaggtccaagaagctatggaaaaccgatctacgtgggatcagcagcctgag
gagcaaaaagaaacacgcctccgacaactttccacggatgagcgtatgtgtaaatcgtac
ttgacgcttgcccgtgagacggtcgacatgctacactatttgacacaacatgttcccgat
cctttcctgcgtcctgagctgatcgaccgtttagcggcgatgctcaatttcaatttacaa
cagctctgtgggcctaagtgcaaacatttcaaagttaaaaacgccgataattatggatgg
gaaccccgacgtgttttggaccaattgaccgatatctatcttcatttggattctgatgtg
tttgctcaagcactagctgccgatgagcgctctttccgttttgaactttttgaagaagcg
gccgtgcgtttagagcgagcactaatcaaagctccacttcaaattgcgcattggagagag
ctgtctgctaaagcgcaacgaatcgtacttcaaaatcaaaaacgtgagctagacttcagc
gacgctccggaagaattccgtgatcctcttatggatacactcatggacgaccccgtcctt
ctacctagtggaaaggttatggatagagccgtcatccttcgtcacttgctcaattcgtct
accgatccttttaatcgtcaaccacttactgaagacatgctgatgcctgttgaagatttg
aagctccgtatcgtagcttggaaacggcaaaaagagtaa
DBGET
integrated database retrieval system
