Daphnia pulicaria: 124329500
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Entry
124329500 CDS
T08670
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124329500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124329500
03009 Ribosome biogenesis [BR:
dpz03009
]
124329500
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124329500
Spliceosome [BR:
dpz03041
]
Complex A
U2 snRNP components
U2 related factors
124329500
Complex B
124329500
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124329500
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
90S particles
Helicases
124329500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
nSTAND3
ResIII
ABC_tran
AAA_30
TsaE
AAA_7
DNA_pol3_delta
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124329500
NCBI-ProteinID:
XP_046644529
EnsemblRapid:
LOC124329500
LinkDB
All DBs
Position
3:10313413..10317327
Genome browser
AA seq
733 aa
AA seq
DB search
MSKRRIEVDDKLSKKSRATGDKGSEADKEKNVTDSKPGGSSASIPVTPSKPGLTLNPLTG
LPYTQKYYDIYRKRIGLPVWEYREKFFELLENNQAIVLVGETGSGKTTQIPQWSAEFARK
LGVKKGVACTQPRRVAAMSVAQRVADEMDVVLGQEVGYSIRFEDCSSPKTVLKYMTDGML
LREAMSDPLLDSYQLVLLDEAHERTLATDILMGVLKEVIKQRRDLKLIIMSATLDAGKFQ
SYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVMQIHMCEDIVGDVLLFLTGQEE
IDEACKRLKREIDNLGPEVGEMKCIPLYSTLPPNLQQRIFEAAPPVRPNGAIGRKVVIST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKQEMQDNTYPEILRSNLGSVVINLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLGALDDDGNMTELGAIMAEFPLDPQLAKMLIASTEFNCSNEILSITAMLSVPQVFM
RPLEAKKAADEAKMRFAHIDGDHLTMLNVYHAFKQNMEDPQWCYDNFVNYRSMKSADNVR
QQLSRIMDRFNLKRTSTEFTSKDYYVNIRKALISGFFMQVAHLERTGHYQTIKDNQVVQL
HPSTCLDHKPEWVIYNEFVLTTKNYIRTCTDVKPEWLIKVAPSYYDMSNFPEGPAKRQLE
QIINRLESREYRN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacgcatagaagttgatgacaagctcagcaagaaatcccgggcaactggt
gacaaagggagtgaagcagataaagaaaaaaatgtaactgattctaaacctggtggttca
tctgcatcaattccagtaacaccatcaaagccagggttgacattaaatccccttacagga
ttgccctatacacaaaaatactatgacatttatcgaaagcgcattggccttccagtttgg
gaatacagggagaaattttttgagcttctagaaaacaaccaggcaatagttttagttgga
gaaactggatcgggaaaaactactcaaattcctcaatggtcggctgagtttgcgcgaaaa
ctaggagttaaaaaaggagtcgcttgtactcaaccacgtcgagttgctgctatgtctgtg
gctcaacgtgtagctgatgaaatggacgtcgttcttggtcaagaagtgggttacagtatc
cgtttcgaagactgttcttcccccaaaaccgtactcaagtacatgacagacggtatgttg
ttgcgtgaagccatgtcagatccactgttagactcgtatcagctagttttattggacgaa
gctcacgagcgtacacttgctactgacattcttatgggtgttttaaaggaagtcattaag
caaaggcgtgatctaaagttaattatcatgtctgccacacttgacgcgggaaagtttcaa
tcttattttgataacgcaccattgatgaacgtgcccggtcggacgcatcctgtggagatc
ttttacaccccagaacccgagcgtgactatcttgaagcagccatacgcacagtcatgcaa
attcacatgtgtgaagatattgtcggtgatgttcttctcttcctcactggtcaagaggaa
atcgatgaagcttgcaaaaggttgaaacgtgaaatcgacaaccttggtcctgaagtggga
gaaatgaagtgtattcctttgtactccacattgccaccaaatttgcaacagaggattttt
gaggctgctcccccagttagaccaaatggagccatcggtcgtaaagtggttattagtacc
aacatcgccgagacctcgcttactattgatggtgttgtttttgttattgaccctggtttt
gctaaacaaaaggtttacaatcctcgcattcgcgtcgagtctttactcgtttctcctatc
agcaaagcatcagctcagcaacgtgctgggcgtgccgggcgtacgcgaccaggaaaatgt
tttcgtctttacacagaaaaagcctacaaacaagagatgcaagacaacacatatcctgaa
attcttcgctccaacttgggatcagtcgtcattaatcttaaaaaattaggcatcgacgac
cttgttcattttgatttcatggaccctccagctcccgagactttgatgagagctctagag
ttgctgaattatctcggtgctttagacgacgatggtaacatgaccgagttgggagcaatt
atggctgaatttccccttgatcctcaattggccaaaatgttgattgcttctacggaattc
aactgctccaatgagatcctttcgattacggctatgctttccgtcccacaagtttttatg
cgtccactggaagccaaaaaggctgctgacgaggccaagatgcgctttgctcatattgac
ggtgatcacttgactatgctgaacgtctatcacgcatttaaacaaaatatggaagatcct
cagtggtgttatgacaattttgtcaactaccggtcaatgaaatcggccgacaatgtgcga
caacagctttcccgtattatggatcgcttcaatttaaaacgcacatccaccgaattcacc
tcaaaggactactatgttaatattcgtaaagcactcattagcggtttctttatgcaggtt
gcccatttagaacgaacgggtcactatcaaactattaaagataaccaagtggtacaactt
cacccttcgacttgcttggatcacaaaccggaatgggttatttacaacgaatttgttttg
accactaaaaactacatcagaacttgcaccgatgttaaaccggaatggcttatcaaagtt
gctccttcttattatgatatgagcaatttcccagaaggaccggcaaagagacaacttgaa
cagataatcaaccgtctagagagtcgagaatatcggaattga
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