Daphnia pulicaria: 124331973
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Entry
124331973 CDS
T08670
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124331973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124331973
03041 Spliceosome [BR:
dpz03041
]
124331973
03036 Chromosome and associated proteins [BR:
dpz03036
]
124331973
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124331973
Spliceosome [BR:
dpz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124331973
Complex B
124331973
Complex C
U2 SnRNP specific factors
124331973
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124331973
TFTC complex
124331973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WDR55
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
124331973
NCBI-ProteinID:
XP_046644802
LinkDB
All DBs
Position
1:complement(13456725..13462755)
Genome browser
AA seq
1215 aa
AA seq
DB search
MYLYNLTLQRATGIIQAVQGNFSGTKQQEIVIARGKVLEIVKPDPNTGKVHTLLSQEVFG
IIRSIISFRLTGGNKDYLVVGSDSGRIVILEYNAAKNVFDKVHQETYGKSGCRRIVPGQY
MAIDPKGRAVMISAIEKQKLVYILNRDAQAHLTISSPLEAHKSNTLVYNIVGVDVGFENP
VFACLEMDYEEADGDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLDEHANFLITVPG
GNDGPSGVLVCSENYITYKNLGEQHDIRCPIPRRRNDLDDPERGMIFVCSASHRTKAMFF
FLVQTEQGDIFKITMDMDEEVVRELKIKYFDTVPVSSSMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSTIPLEEGDTFFFAPRPLKNLVLVDEMESLSPVLACHIADLANEDT
PQLYALCGRSSRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRKRADDEFDAYIVVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLGCSSLGDNALLQVYPEGIRHIRADRRINEWKSPG
KRAISRCAVNQRQVVISLAGGELVYFEMDPTGQLNEYTERKEMTAEVVCMALANVPSGEQ
RSRFLAVGLADNTVRVISLDPNDCLTPLSMQALPATPESLCIVEMGGHDKDSETTGTSGQ
LFLNIGLQNGVLLRTVLDPVTGDLADTRTRYLGSRPVKLFRVMTQNHEAVLAISSRTWLS
YYFQNRFHLAPLSYDSLEFASGFASEQCPEGVVAIASNTLRILALEKLGAVFNQVSYPLE
YTPRKFVVHDSGRMIIIETDHNAYTLETKLERRQQIAQEMRDAATEEEQELAHQMADAFL
NEDLPESEFGAPKAGAGMWASIVRIMDPTSGNSLHTIRLPQNEAALSIGLARFMNQDPED
YFVLVGVAKDLKLNPKQCDGGFIYTYKLINEWSALEFVHKTPVEDTPYAICAYQGRVLIG
VGRLLRLYDMGKKKLLRKCENKHLPSCVVNIQALGQRVYVADVQESIHFVRYKRMENQLI
IFADDTHPRYVTTMCLLDYDTVAVADKFGNISVLRLPSRTSDDVDEDPTGNKSFWDRGVL
NGASNKAEVLCNIHIGETALSLQRATLIPGGSESLVYTTLSGSIGVLVPFTSREDHDFFQ
ALEMHLRSEHPPLCGRDHLAFRSFYFPVKNVIDGDLCEQFNSIDSSKQKAVADDLDRAPN
EVSKKLEDIRTRYAF
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttacaatctgactctgcagcgtgccactggcatcattcaggcagtccagggc
aacttcagtggcaccaagcaacaggagattgtcattgctcgtggtaaggttctcgaaatt
gtgaagccggaccccaacactgggaaagtacacacacttctcagtcaagaggtttttgga
atcatcaggtcaatcatcagtttcaggcttactggaggaaataaggattaccttgtggtt
ggatcagactctgggcgaattgttattctcgaatacaacgctgctaaaaatgtgtttgat
aaggtgcaccaagaaacgtacggcaaaagcggttgtcgtcgtattgttcccggacagtac
atggcaattgatcctaaaggcagggctgtcatgatcagtgcaattgagaagcaaaaactg
gtctacattctgaacagggatgcccaagcccatttaaccatttcttctccgctggaggct
cacaagtcaaacactctagtttacaacatagtgggtgttgacgtggggtttgaaaaccct
gtttttgcctgtttggagatggattatgaagaggccgatggtgatccaacaggcgaagcg
gcacagaagacgcaacaaacgcttacgttctacgaactcgatctgggcttaaaccacgtc
gtaaggaaatatagtgagccgttggatgagcacgccaatttcctcatcactgtacctgga
ggaaacgacggaccttccggagttctggtttgctccgagaactacatcacatacaagaat
ttgggtgaacagcatgacattcgttgcccaatccccagaagaaggaatgacttggatgat
ccggagaggggtatgattttcgtctgctcggcttcccaccgcaccaaggccatgtttttc
ttccttgtccagacggagcagggcgacattttcaagatcaccatggatatggatgaagaa
gtggtgagagaattgaaaatcaagtacttcgataccgttccagtttcgtccagcatgtgt
gtgctgaagacaggctttctattcgtcgcatcggaatttggaaatcactatctttatcag
attgctcatttgggggatgatgacgatgaacccgaattcagctctactataccattggag
gaaggagatacattcttctttgctccgagacctttgaagaatcttgttctcgtggacgag
atggagtctctatctccagttctggcttgccatattgctgatctcgccaatgaggataca
ccgcagttgtatgcactttgtggtagaagttctcgttcgtctcttcgtgttctacgtcat
ggcttggaagtatcggagatggctgtttctgaacttcccggcaaccccaatgcagtgtgg
actgtcagaaaacgtgccgacgacgagtttgatgcttacattgttgtgtcattcgtgaat
gccacacttgtgttgtccatcggtgaaactgttgaagaggtgacagactccgggtttttg
ggcacgacgcctactctaggttgttcctcgctgggtgataatgcattgctccaggtttat
cccgaaggaattcgacacataagggcagatagaaggatcaacgaatggaaatcccctggt
aaacgagctatatctcggtgtgcagttaatcagcgccaggttgtcatttctctagctggc
ggggaattggtgtacttcgagatggatccgaccggtcaattaaacgaatatacggagcgg
aaggagatgactgccgaagttgtatgcatggctttggctaatgtcccgtctggcgaacag
agatcacgtttcttagctgttggcctcgcagataatactgtcagagtcatctcattagat
cccaatgactgtcttacacctttgagtatgcaagcgttaccagccactccagaatccttg
tgtattgttgaaatgggtggtcacgataaagattccgaaacaactgggacttcaggacag
cttttcctcaacattggtcttcagaatggtgttttattgagaacggtgttggatcctgtt
acgggggatttggctgatacgagaactcggtaccttggttccagaccagttaaacttttc
cgcgtcatgacacaaaatcacgaagccgtgttagccatctcttcgcgtacctggctgagc
tactactttcagaatcgtttccatctcgctcctctgtcttatgattcgttggaatttgca
tctggtttcgcatccgaacagtgtcccgaaggagtcgtcgccattgcttccaacacactt
cgtattttggcgttggagaagttgggtgccgtcttcaatcaagtctcatatccattggag
tatacacctcgaaaattcgtcgtacacgattccgggcgcatgataataattgaaaccgat
cacaatgcttatacgctagagaccaagcttgagaggagacagcaaatagctcaagagatg
agggacgctgcgacggaagaagaacaggagttggctcatcaaatggccgacgctttcctc
aatgaagatttacctgaaagtgagtttggagctcccaaggctggtgctggtatgtgggct
tcgatcgtccgcatcatggaccctactagcggcaattctttgcacacaattcgattgcca
cagaacgaggctgccctgagtataggtttggcaaggtttatgaatcaggacccagaagat
tatttcgttcttgttggagttgcaaaggatttgaagctaaatcccaaacaatgtgatgga
gggttcatctatacatacaaattgataaatgagtggtcagcgcttgaatttgttcacaaa
actcctgtcgaggacactccctacgccatctgcgcctaccagggtcgagttttgattgga
gttgggcgattgttgaggttatatgatatgggaaaaaagaagttgctgcgaaaatgtgag
aacaagcatttaccaagctgtgtcgtcaacattcaagccctcggtcagcgtgtgtatgtg
gcagatgttcaggaaagtatccacttcgtccgctacaagcgtatggagaatcaactgatc
atctttgccgacgatacacaccctcgctatgtcaccaccatgtgtcttttggattatgac
actgttgcggtagctgataaattcggcaacatttcagtgttgcggctcccatctaggaca
tccgatgatgtggacgaagatcccactggaaacaaatcattctgggatcgtggtgttctt
aatggggcatctaataaggccgaagtattatgcaacattcatattggcgagactgcattg
tcgctgcaaagagcgacccttattccaggcggttctgaatcccttgtctacacaactttg
tccggatctattggtgtgttggttccgttcacgtcaagggaagatcacgattttttccaa
gccctcgaaatgcacctcaggtctgaacatcctcctctatgcggacgagaccatttggcg
ttcaggtctttctacttcccagtcaagaacgtgatcgacggagatctatgcgagcagttt
aactcaattgattcgagtaagcagaaggcagtagccgacgatctcgaccgtgctccaaat
gaagtgtctaaaaaattagaggacattcgtactcgatatgctttttaa
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