Daphnia pulicaria: 124336125
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Entry
124336125 CDS
T08670
Name
(RefSeq) CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
dpz
Daphnia pulicaria
Pathway
dpz03022
Basal transcription factors
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124336125
09124 Replication and repair
03420 Nucleotide excision repair
124336125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124336125
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124336125
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124336125
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124336125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_UBOX
zf-C3HC4
zf-UDP
zf-RING_2
zf-RING_5
ZNF512_C2HC
zf-C3HC4_2
zf-RING_4
TRAF3_RING
zf-ANAPC11
zf-RING_16
LMBR1
Motif
Other DBs
NCBI-GeneID:
124336125
NCBI-ProteinID:
XP_046645754
LinkDB
All DBs
Position
1:complement(13024323..13025762)
Genome browser
AA seq
341 aa
AA seq
DB search
MDGNDQTCPKCKTTKYRNPAMILMVNACGHALCESCVELIFAKGSAACPECKCALRRQNF
RIQLFEDPAVDKEVDIRKRILKEFNKRQEDFSTLREYNDYLEEVENIIFNLVFDVDSTNT
NKMIDNYKKENKDITMKNRNRQSQEEIELEELLEAEKAQQSEKANSYVNAELEEKKQKHK
AREKLIDELMFSDADAKSIVASHVQATAALAKEQPKAAAQAGGPVVKSSKFSSGIQIGLR
QNTSSFLPIPKQQDLPLFHYSAPVFDYNGPSPPAIEVLGKLKYFANIRAANATERAGGYT
EALSCCRALQEAMGGLFYIPQSGHKTAVAASAEETDDMETA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaacgatcaaacgtgcccaaaatgcaagacaaccaaataccgaaatcctgcc
atgattctgatggtaaatgcctgtggtcatgctctttgcgagtcctgcgtagaacttatc
ttcgccaaaggctctgcggcttgtccggaatgcaagtgtgcactcagaagacaaaatttt
agaattcagctctttgaggatcctgctgttgacaaagaggttgatatccgcaagagaatt
ctgaaagagtttaacaaacgccaggaggatttctccactctgcgagagtacaatgattac
ctggaagaggtggaaaatataattttcaacctggttttcgatgttgactctacaaacacc
aacaagatgattgacaactacaagaaggaaaacaaagacataacaatgaaaaacagaaac
aggcagagccaagaagagattgaattggaagagttattggaagctgaaaaagcccagcag
tcggaaaaggccaattcgtacgtcaatgccgagctggaagaaaagaagcagaaacacaag
gctcgagagaaacttatcgatgagctcatgttttcggacgccgatgccaagtcgatcgtg
gcctctcacgttcaagcaaccgccgcactggctaaagaacaaccgaaagcagccgcccag
gccggtggaccagttgtcaaatcgagcaaattctcatcaggaattcagattggccttcgt
cagaacacgagttcgttccttcccattcccaagcaacaagatttgccactcttccattac
tcagctcccgttttcgactacaacgggccttcacctccggccatcgaagtgctgggcaag
ttgaagtatttcgccaatatccgagcggccaatgctactgaaagagccggtggctacact
gaagctttatcttgctgccgggctcttcaagaggcgatggggggattgttttatatcccg
caatcgggccacaagacagccgtagccgcttcagccgaagaaaccgacgacatggaaaca
gcataa
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