Daphnia pulicaria: 124336833
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Entry
124336833 CDS
T08670
Name
(RefSeq) probable ribonuclease ZC3H12C isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124336833
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
124336833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
RuvA_C
zf-CCCH_2
zf-CCCH_4
zf-CCCH
DUF7070
Motif
Other DBs
NCBI-GeneID:
124336833
NCBI-ProteinID:
XP_046646606
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Position
4:14303987..14311374
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AA seq
918 aa
AA seq
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MLLRFDSTLAQHGPMTWIPSGSSSSTDRFLPPLPVLAHLPPPYSLLFPPPPAAEMEETDP
SPTAHKPCLAAKRPLMAPYSEAAKALLSSPLPPELVVDFKGCSTSSTASPTISLRNSTSE
NNVHHLPAESGDRRLDGTGSNLACRTLSDGARKSYARRKLESEDSSYDSDYECSDSLNLA
LTSLSGDLIQSVAGVAQQHEDISRTVSDTLAAEFNEYVCIYNPSFQRLKETARNDSDDSD
ESPLACATDPSYSNRVEFALKLGYTEQQVQKALVKLGQPTQNELLAELIRLASLAGPGST
EGIESQSDCIRSHRPLSITSSDEAVLRHVVIDGSNVAISHGNKEIFSCRGIQLCVDWFRA
RGHREITVFVPMWRKETSKIDAPIANQEILLELEKERMLVFTPSRQVGGRRLVCYDDRYI
LRLAAETDGIVVSNDNYRDLVSENPEYRKIVEERILMYSFVNDRFMPPEDPLGRNGPKLD
RFLRKPPAKGSAEATAPPCPYGKKCTYGNKCKYYHPERGNVPQKTISERLAEQTVARKIR
ESSPTCKTFSLPLTKNFASPTAGKPPSPVKKTPLARTKSIVPTLSLLPPELTEERPVQDG
PKPEEADTRAPILKSRSVENMARLSPVRSVIQAQQQIPHGLMLHAPPPAFSVPPPPMTMD
GFGSNSINWNRSGHVPLGQQLSDPPSVTSSSGVEEPDDSARPNPHRKVQRQLTLNPLNPA
CDPRLYTLKGLAPPYPPPPISVHSIVTRNASAPAPTSQLHARSHQHVQPAGSNNHMQRLN
STSDTQLNLYGAAASAAAMPGSQDWSSQGLTDPFDEWTNSPPPPLPPVQPSQHMHQQQHS
WASRTSSLPAHQHLSSSPVQAFNENGPNSKSEARYKLFYHLAAIFPEEQVRQVMSLMPDE
TNAQKICAAILALYPKDN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgcgatttgattctacgttggctcagcacggtccgatgacatggatcccgtcc
ggttcgtcttctagtaccgatcgattcttaccgcctctaccagtgctggctcatcttcct
ccgccatattctctcttgttcccgcctcctccggccgccgaaatggaagaaacagacccg
tcgcctactgcgcacaaaccctgtctggcagccaaacggccgttaatggccccttacagt
gaagcggctaaagccttactcagttcacctcttccgcctgaattggtcgtcgactttaaa
ggttgcagcacgtcgtcgacagcgtcgcctaccatttcactgcgcaattcaacttcggaa
aataacgttcatcaccttccagccgagagtggcgatcgaagattggacggaaccggatcc
aatctcgcttgccggacactcagcgatggtgctcggaagagttatgcccgtcgcaaactg
gaatcagaggactcgagttacgattccgattacgagtgttccgatagcctaaacttggca
ttgacaagtctgtcaggagaccttatccaatcggttgcgggtgtggctcaacagcacgaa
gacatttcccggactgtgtccgacaccctggccgccgagttcaatgaatacgtctgcatc
tacaatccgtctttccagaggttgaaggaaacggcacgcaatgattccgacgactccgac
gagagtcccctcgcctgtgccactgacccgtcttattcgaatcgggtcgaatttgcctta
aaattaggttataccgagcagcaagttcaaaaagctttggtcaaattgggccaaccaacc
cagaatgaacttttggccgaactaatccgtttggcatctctagccggaccagggtcgacg
gaaggaatcgaatcacagtcggattgtattcgatcgcatcgtccattgtccatcactagt
tcagatgaggcggtgctaaggcatgtcgtcatcgatggaagcaacgtcgccattagccat
ggcaacaaggaaattttctcctgtcgaggaatccagctgtgtgtagactggttccgcgcc
agaggtcaccgtgaaataaccgtcttcgttcccatgtggcggaaagaaacgtctaaaatt
gacgcgcccatagccaatcaagagattttgctagaattggaaaaggaacgaatgctggtt
ttcactccgtcaaggcaagtcggtggccgtcgtttggtttgctacgacgatcgttacatc
ttgcgattggcggccgagacggacggcattgtcgtatccaacgacaactaccgcgatctg
gtgtctgaaaacccagaatatcgaaagatagtcgaagagcgcatcctgatgtactcgttc
gttaacgatcggtttatgccgcctgaagatcctttgggtcgtaatggacccaagctggat
cgcttcctgcgcaaacctccagccaagggatccgcagaagctactgcccctccgtgtcca
tatggcaaaaaatgtacctatggaaacaagtgcaaatattatcatccggagagaggcaat
gtccctcagaaaaccatcagcgaacggttggccgagcagacggtggcaagaaaaatccgc
gaatcttctccgacatgcaaaacgtttagtctgccgttgacgaaaaattttgccagcccc
acggccggcaaaccgcccagtcctgtgaagaaaacgccactcgcacggacgaaatcaatc
gtgccaacattgtcacttcttcctccggaattgactgaagagagaccagttcaagacggc
cctaagccggaagaggccgacactcgggcgcctattctcaagagccgcagtgtagaaaac
atggcccggctttcgccagttcggtcagtgatccaagcacaacagcaaatccctcacggt
ctaatgcttcacgctcctccacccgctttctccgtccctccgccaccaatgaccatggat
ggattcggaagcaacagtattaactggaacagaagcggacatgtccccttgggccaacag
ctatcagatccgccttccgtgacttcttctagcggggtagaagagccagacgactctgct
cgacctaatccgcaccggaaggttcaacgtcagctgacattgaatccattgaacccagca
tgcgatccgcgattgtacaccttaaagggcttggctccgccttatccgcctccgcccatt
tccgtccattcgatcgtcactcgcaacgcatccgctccggcaccaacgtctcaacttcac
gctcgctcccatcaacatgtgcaacccgcaggatccaacaatcacatgcaacgactgaac
agcacatccgacacacaacttaatttatacggggctgctgcgtcggcggcggccatgccc
ggctcgcaagattggagctcacagggtctgacagatccttttgacgaatggaccaactct
cctcctccgccattaccacccgttcagccgtctcaacacatgcatcaacaacaacattct
tgggccagccgaacttccagtctgccagctcatcaacacctgtcttcatcgccggtgcaa
gccttcaacgagaacggacccaacagtaaaagcgaagcacgttacaagctcttttatcac
ttggctgccatctttcctgaagagcaggtgcgacaagtgatgtcactgatgcctgacgag
acaaacgcccagaaaatctgcgctgccattttggcactttaccccaaagacaattag
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