Daphnia pulicaria: 124336856
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Entry
124336856 CDS
T08670
Name
(RefSeq) HEAT repeat-containing protein 1-like
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
dpz
Daphnia pulicaria
Pathway
dpz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124336856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dpz03009
]
124336856
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124336856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BP28CT
U3snoRNP10
HEAT_EZ
HEAT
Motif
Other DBs
NCBI-GeneID:
124336856
NCBI-ProteinID:
XP_046646655
EnsemblRapid:
LOC124336856
LinkDB
All DBs
Position
4:12924545..12931751
Genome browser
AA seq
2098 aa
AA seq
DB search
MTSLSRQLRKLAAPQTSLLKLDKKKPSLLFDPLEAANLDRDAVYEIGLSGLEDLEKLDIR
FREFRNSLYSLTSKQFERSVHTVAVNAKINEEIERFLVLLSPYFTLRSSQKALEWLVNRY
HIHQFNINALIMCVLPFHDTNIFVRAIQLIGLKNQFGQWNWLRPLQKPGVPLPKNTLLNR
CVKDLGLIKLICANLEKAITIHSEKPSVLNIYIAFFTTTMIGMVEQSNGISEEQLAILLP
SLLNGLVSKFADLIAGCYMIIAQLNRKANLNQRVVEDLALCILKGMIPALSSEAITLLIV
LWDKQKDRVFNVNHMRNCIEFLKSNAEFLPSIGILASCYQVSSFVSPVIQGFVMELGMAV
KDSRFNKLSQFLTKLVEEVRFIGKDPIIIVKSFVIGYLEAIDKIEASQKLKLQIVISAVL
DRLEKQYPIDFEKALHLAMIENAENEIRKEELGKLLGASWDVEHTSLFLKLNHNSAQVRL
EAIRSVVQAIHQKKIRNMSFAVSSIVERLTDSDAQVVSEVLLLGKTLLTILPSDRQFSIL
LAALGNGQPQYSENWNSVRLELIKLLGSKVCVDKLSEDELVELFLALLPFLFATNTADLT
LTKAIVASDLKTHSPMLQVLATKINSQQRNNDSKLPKIELSASSLHEALRQVKPFSNEQL
NIKVFQRMLDCIRDSSTHSSLSLPVIFVVAALIQGESELLKATKMATRFVDVLFGMIESA
RVKRKYKEEGKQGNTRIHAMLLQARGGSIAHDALIYGAMEVFAALTIEYSKMEGQQWAAL
ANTDDPADASMLFLLSLFRFLVFGLTSGSSALFQTSFQTFFGKMIQTKSRLFFLSLVWNS
PHADDSLKVVALKMGAIYLEQDPTRNTWAIEYNSSVVPQLLCCLTSPNSHIREHALAIFK
VLASSFSTSTKTYGPLIVEFHESAEEMKIDEEQVKVVVSRHLSKKAALPSSTALFKLIVS
AEVPDYVKQGLLKALEQVNSTSILTDLLPLIVELINKMDSPLGVIQSNVLTMLLERFNPV
TAPLIATNEGWNCFQKALRSPTNAIITGEEVFLSPQDIIIEVITKDFFKALPSQPIKLKI
FDELLEIIINTDKTVTARQARRALKRISFDATLLITQLQFKSQPSEPTGIKGKELRGRRP
RQPSLRPSQCLLWNRILAVLEMLQVKREISKIHLLIAPLFDLLKICLDEEEQVSLEYSKQ
LILSCLLSCCQKLSPGDSVKLASEFNTGLIVQCIRVSNNPQTHHQALLLLSLAAQLFPSH
VLHNIMAIFTFMGTSVLRQDDAYSFQVIAKTLESVIPTLIEASMKTAVEPVVTTVIHVFA
DALPEVPEHRRIPVFDKLLTTLDPEIYLWLAPTLILSNMATQGSRLGRGLVKEDDKDRIV
PDVEFSLNVCHLYKPQVQLNACIRMIEYLQSLPVEKDERRRLTRNEDKDMTEGSTPFSLD
VHSTRQLCHFKLLLVNFISTLLSSNRLVAQLVELDDSEKPSLEKLYQKLVETALEYTQSV
SRQVDLPLKVTSAEQGPNPKFWRALLHRSYDVIDRINSLLPRTMFISVVHTLLSHPIPSI
RRRAMELLSAKLQHQSNFFAVTQDQSVLLQLIPSLTAIASGQGSNEEEALNQQTAFFTLK
LLCRCMGPSASSSFRPVLDVVVETISPSKTTSSTVLASAFLCLAELIQNMGVQSLPHLPR
YGANIVSRLGDISSIESHDLLLLSVVTAVYKLVETLPQFLVPYLPPILKQICYLSAKQPV
TEKPSQLQSRLQSIRHSLATASVPRSLVNSVTQVYAEVTMIESGTFVPTLSIAPLMSILS
ESFAAMSSEELTIQLPALTNFFIKALDTRSSLSVQKATIEQMNAAEEPVVSALVSLVLKL
SEASFRPLFFQLYDWATRVTDMRKERLVTFYNLTMQIAEKLKGLFVVFAGHFIRNAAQVI
IDTNFTQKGSLPFKGPHAEGNTLMLLEYVLRCLYRVCLHDNENFINKERFETLMEPLVDQ
LENQLGEDDVVNRRVKDLLVPLLAQMAVAASDDYLWKALHYQLLLKTRSNSPHVRLGSLS
GLSALVEKLGEDYLALLPEAIPFLAELLEDDVNEVEVAAQTTIANMENMLGEPLQKYF
NT seq
6297 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtttatcacgtcaacttcgaaagctcgcagctcctcagacttctctcctaaaa
ctcgacaaaaagaaaccttcgctcctttttgatcctcttgaagcagcaaatttagacaga
gatgcagtttacgaaatcggattgtctggtcttgaagacctggagaaattggacattagg
ttcagagagtttcgtaattctctgtactctctcacttccaaacagtttgagcggtcagtc
catacagttgccgttaatgctaaaatcaatgaagaaattgaaaggttcctagttctttta
tctccctatttcaccctgaggagttcacagaaagcactggagtggcttgttaatcgctat
cacatccatcagtttaacatcaatgccttaattatgtgtgtgttgccttttcatgacaca
aacatttttgttcgtgctattcaattgattggattgaagaatcagtttggtcaatggaac
tggcttcgtccccttcaaaaaccaggagttccgttgccaaaaaacacacttttgaatcgt
tgtgttaaagatttgggactcatcaaactcatttgtgcaaatttggagaaagccattacg
attcactcggaaaaaccatccgtcctgaacatttacattgcatttttcaccacgacaatg
attggtatggtggagcagtcaaacggaatcagcgaagagcaattagctattctcctccca
tctcttctaaatggacttgtgagcaagtttgccgatcttatcgctggctgctacatgata
atcgctcaactgaataggaaagcaaatttgaatcaaagagttgttgaagatttggctcta
tgcattttaaaaggcatgattcctgctttatcttctgaagcaataacgctgcttatcgtg
ttatgggataaacaaaaggaccgcgttttcaacgtcaatcacatgcgaaactgcatcgaa
tttcttaaatcaaatgcagaattccttccatcgattggaattcttgcctcttgttatcag
gtgtcttcttttgtatcgccagtgatacaaggttttgttatggaactaggaatggcggtt
aaagactcccgcttcaacaaactttctcagtttttaacaaaattggtcgaagaagttcgt
tttatcggaaaggacccaatcattattgtcaaatcttttgttattggatacttggaagct
atagacaagattgaagcatctcaaaaactgaagctccaaatagtgatctctgctgtactt
gatcgtcttgagaaacaatatccgattgattttgaaaaagctcttcatctagcgatgatt
gaaaatgcagagaatgaaatccgcaaagaagaactaggcaaattgttaggggcaagttgg
gatgtggaacacacatcactctttctgaaattgaatcacaattcagctcaagtcagacta
gaggctattcgatcagtggttcaggcaatacaccaaaaaaagatacgcaatatgagtttt
gccgtctccagtattgttgagagactcaccgacagcgacgcacaggtggttagtgaagta
cttctccttggaaaaactctactcactatccttccaagcgataggcagttttctatatta
ctggctgctcttggtaatggtcaaccacaatacagtgaaaactggaattcagttcgtctt
gagctgatcaagttgctcggcagcaaagtttgtgtcgacaagctaagtgaagatgagtta
gttgaactcttcttggcactcttacctttcctctttgccaccaatactgctgatttgaca
ttaacgaaggcaatcgtcgcatcagatttaaaaacgcattctccgatgctacaagttctt
gccacaaaaattaattcccaacagagaaacaatgacagcaaattgccaaagatcgaactc
tccgccagcagcctgcacgaagccttgcgccaagtcaagccgttttccaatgaacagtta
aacattaaggtgtttcaacgaatgctggattgcattagggattcatcgacacattcatcg
ctatctctcccggttatttttgtcgtcgctgcgctcatccaaggcgagtcggagttattg
aaagccactaaaatggctactcgttttgttgacgttctttttgggatgatagaaagcgct
agggtgaagcggaaatacaaagaagaggggaaacaaggaaatacgcgaattcacgcgatg
cttcttcaggctcgtggtggatcaatagctcatgacgcactaatctatggtgccatggaa
gtatttgccgctcttacaattgaatactcgaaaatggaaggacaacagtgggcggccctg
gccaatacggatgatcctgccgatgccagcatgctgttcctgctgagtttgtttcgattc
ttggtgtttggactgacgtcaggttcatccgcactgttccagacatcctttcagaccttt
tttggtaaaatgatacaaacaaagagcagactgttctttctcagcctcgtatggaacagt
ccgcatgcggatgattcgctgaaggtagttgcgttaaaaatgggcgcgatatacctagaa
caggaccctaccagaaacacttgggctatcgaatacaactcgtctgtcgtcccccaactt
ctttgctgcttgacgtcaccgaactctcacatccgggagcatgctttggccattttcaaa
gtacttgcatcatctttctcaacctcgacgaaaacctacggcccgcttatcgtagagttc
catgaatcagcggaagaaatgaaaattgacgaagagcaagttaaagtcgttgtgtctagg
catttatctaaaaaggctgctttaccatcatcaacggcattgttcaagttgatcgtctcc
gcagaagttcccgactacgttaaacaaggactgttgaaggcccttgagcaagtgaactct
acaagcattttgacggacttgctgcctctgattgttgaattaattaacaaaatggactca
ccgctcggagtaattcaatcgaatgttctgactatgcttttggaaagattcaatcccgta
acagctccacttatcgccacaaatgaaggatggaactgtttccagaaggcacttcgttca
cctactaatgccatcattacaggagaggaagtatttctgtcccctcaggatatcatcatc
gaggtcataaccaaagactttttcaaagctctgccttctcagcccatcaaactgaagatt
tttgatgagctattagaaatcatcataaacaccgacaaaaccgttacagctagacaagca
cgaagagcgttaaaacgaatttcgttcgacgccacattgttgatcacacaacttcaattc
aagtcccagcccagcgaaccgacgggaataaaaggaaaggaacttagaggacgtcgccca
cgccaaccctcgttgagacctagccagtgtcttctttggaaccgaattctggccgtgctg
gaaatgctgcaagtcaagagagagatttctaagattcatttgctcattgctcccctgttt
gatttgctgaaaatttgtctggacgaggaagagcaagtttcattggaatactcaaagcag
ttgatcctttcgtgtctgctgagctgttgtcaaaaactttctccaggagatagcgtgaaa
ctagcctctgaattcaacactggattgattgtacagtgcatccgtgtctcgaacaatccg
cagacacaccaccaggccttactattgctttctttggctgcccagcttttcccaagccac
gtcttgcacaacattatggccattttcactttcatgggtacatccgttttgcgtcaggac
gatgcttacagcttccaggtgatagcgaaaaccctcgaatccgtcataccaacgctcatc
gaggcttcgatgaaaacggcagtagaaccagttgtgacgactgtcattcacgtgtttgct
gacgctcttccggaagtcccagagcaccgaagaattcccgtttttgacaagctgttgacg
acgttggatccagaaatttatttgtggctggcacctacactcatcctgtcgaacatggcc
actcaaggatcacgtctgggaagaggattggtcaaagaagatgataaagaccgaatcgtt
cctgatgtagagttctctctgaatgtctgtcacttgtacaagccacaagttcaactgaac
gcatgcatccgtatgattgagtacttgcaatcgttgccagtcgagaaagacgaacgacgt
cggctgacaagaaacgaagacaaggatatgacggaaggaagcacacctttcagtctcgac
gttcacagcactcgtcaactgtgccacttcaagttactgctggtcaatttcatttcgacg
ctcctttcatctaatcgattagtcgcccagctggtggagttggatgactcggagaagcca
tcattagagaaactctaccagaaactagttgaaacggctttggagtacactcagtccgtg
tcgcgtcaagtggatcttccactcaaagtaacctcggccgaacagggtccgaacccgaaa
ttttggcgagctttattgcatcgttcctatgacgtcattgaccggattaatagtttacta
ccccgcaccatgttcatctccgtggtgcacactttactgtcccaccctattccatcgatt
cgacgtcgtgccatggaactcctcagcgcaaaattgcagcaccagtcgaacttcttcgct
gtgacccaggatcaatcggtgcttctgcagttgatcccttcattgaccgccatcgccagc
ggacaaggatcgaacgaagaggaagccctgaatcaacaaacggcttttttcaccctcaaa
ttgttgtgccgctgcatggggccgtcggccagctcttcattccgcccagttttggatgtc
gtggttgaaactatttcaccgagtaaaacaacttcgtccactgtcctggcgtcggcattc
ctctgcttggctgagcttattcaaaatatgggcgtacagtctctaccacatcttccacgc
tacggtgccaacattgtttcccgcttaggagatatctccagcatcgaaagccacgacctg
ctgttgctcagcgtcgtaacggccgtttacaaactggtcgaaactttaccccagtttctt
gttccctatctgcctcccattctgaaacagatttgctacctatcagccaaacaacccgtt
acagaaaaaccatcacaattgcaatcgcggcttcaaagtattcggcactccctagcaacg
gccagtgtacctcggtcgttagtgaatagcgtcactcaagtatacgccgaggtgaccatg
atcgaaagcggaacttttgttccgacactttccattgctcctttgatgtcgatcctgtct
gaaagttttgctgccatgagctccgaagagttgactattcaacttcccgctttgacgaat
ttcttcatcaaggcgttagatactcgatcgtccctgagtgttcaaaaagcaactattgaa
cagatgaatgctgcggaagagcctgtcgtctcggctctagtgtccctggtacttaaactc
tcagaggccagtttccggcctctattcttccagctgtacgactgggctacccgggttacg
gatatgaggaaagagcgtctcgttacgttctacaacttgacgatgcagattgccgaaaaa
ttgaagggtctctttgtcgtctttgccggccactttatccggaatgcagcccaggtgatt
atcgacaccaacttcactcagaagggatccttaccattcaagggaccccatgccgaaggg
aacacgttgatgctactcgaatacgtgctgcgatgcctgtaccgtgtttgcttgcacgat
aacgagaatttcatcaacaaggaacgatttgaaactctcatggagcctttggtggatcag
ctcgaaaatcagctaggagaagatgatgtcgtcaaccgacgtgtcaaggatctcctcgtc
ccactgctggctcagatggcagttgctgccagcgatgactacctgtggaaggcacttcac
taccagttgctgctgaagacgagaagcaactcgcctcacgttcgactgggatcgcttagt
gggttgtcggcgctcgtcgagaaactaggggaggattatttggctttattaccggaagcc
atccccttcttggcggaattgcttgaagatgatgtcaacgaagtggaagtagctgctcag
acgacgatcgccaatatggagaacatgcttggagaaccactgcagaaatatttctaa
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integrated database retrieval system
