Daphnia pulicaria: 124338089
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Entry
124338089 CDS
T08670
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124338089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124338089
03041 Spliceosome [BR:
dpz03041
]
124338089
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124338089
Spliceosome [BR:
dpz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124338089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Med15_C
Motif
Other DBs
NCBI-GeneID:
124338089
NCBI-ProteinID:
XP_046648108
LinkDB
All DBs
Position
4:20863403..20866299
Genome browser
AA seq
686 aa
AA seq
DB search
MSKPSKTKRSDSESIKQDPKKSKNDVSSMAAASKVKEFCKNFMDIEDKEVESRTGESDLK
IFKETCCELKRLMTDILQLKTSGKTDEETSKKIIEKRIEASLLFVTLKKLNRIDKLRLKK
ARDTTHDAKQRVDTFHLQLENLLYEVFHLKKEVDKCLEFKSKDEDIELVPVEEFYQEAPS
SISKMELTKSNQHKLTLARLEWEFEQRKRLSEQCRSLEQNREKASSEISQKQKQLESLLP
RLTSILESTRPLQEELNLPVERIKFQKELAVLLPDPLYILYSQIKAFIEACDPSLQISIE
GGMEDAINFGSKNKTGLDEILEDVDSAESDMETEYETNKRSATSNKMKTDWQLTRHPLRI
QLKIERVVLNFTYLTTLNIVTVDCKPVQQDDGVNQICMIDNLLSGLFPNDHGDESPSWVN
CFQARSMINGKITEQGKSYLWAQRLAGLDFNGIVKSTPQSFINTEFVETVILALKSRITY
RFQFVKVLHLLEKGELDLNQDSNATFPPTIYSRLVSWTSSTYEECLVTSKNLERLLNFLE
VNPKSLSFYKATLERESAKLLAMFMVPVDYPNSTPICSLELNWNGKHNRENSEIIRRIEA
EVNVPSTELPPQHKVDLLTVQLKKLSLHLDLITEIDGQLMKKGGGSWQSQSKPEFAAEKM
IPQLIKGHDRAYPTKYDTGSGFFLHH
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccttccaaaactaaaagaagtgactccgaatctattaaacaagatcccaaa
aaaagcaaaaatgatgtttcatctatggcagcagcaagtaaagtgaaggaattttgcaag
aatttcatggacattgaagacaaggaagttgaatcccggacaggggaaagtgacttgaaa
atattcaaagaaacatgttgtgaattaaaaagattgatgacagacattttgcaattgaaa
acatctggaaaaaccgatgaagaaaccagtaaaaagatcattgaaaaaagaatagaagct
tctcttttgtttgtaacattgaagaagttaaatcgaatagacaagcttagattgaaaaag
gcaagggatacaacccatgatgccaagcagcgtgtggatacatttcatttacaactagaa
aatctgctgtatgaagtctttcatctgaagaaagaagtggacaagtgtttggagttcaag
tctaaagatgaggacattgaacttgttcctgttgaggagttttatcaggaggccccaagt
agcatttctaaaatggaattgaccaaaagtaatcaacacaaattgactttggctcggttg
gaatgggaatttgaacaacggaaacgtctttcggaacagtgccgtagtctggaacaaaat
cgagaaaaggcatccagtgaaatcagtcagaaacaaaaacaacttgaaagcctgttaccc
agacttacttccatacttgagtccacgcgacccttacaagaagagcttaatttgcctgta
gagcgaatcaagtttcagaaagagttggctgtgttattaccggatccactttacattttg
tacagtcagataaaagcgttcattgaagcatgcgatccgtcattgcaaatttctatcgaa
ggtggaatggaagatgctattaattttgggtcaaagaataaaactggtttggacgaaatt
ctcgaggatgttgattcagcggaatctgacatggagacggaatatgaaacaaacaaacgc
tccgcgacttcaaataaaatgaaaacagattggcaattgactaggcatcctttacgtatt
caacttaagattgaacgcgttgtccttaacttcacgtatttaacaacattaaatatcgtc
acggtcgactgcaagcccgttcagcaagacgatggagtaaatcagatttgtatgatcgat
aatctcctttccggactttttccaaacgaccatggggatgaatcgcccagttgggtcaat
tgttttcaagcaaggtctatgatcaacggtaaaataactgaacaaggaaaatcttacctt
tgggcccaacgtttagctgggttagatttcaacggcatcgtaaaatcgacacctcaatct
ttcatcaacacggaattcgttgaaacggttattcttgccctaaaaagtaggattacttat
cgtttccagtttgttaaggttttacacttacttgaaaagggtgaacttgatctcaatcaa
gactcaaatgctacttttccaccaacaatctattctcgactcgtctcatggacgtcttct
acgtatgaagaatgcctcgtaacgtcaaagaaccttgaacggctgttgaacttccttgaa
gtaaatccaaaaagcctttcgttttacaaagcaactcttgaaagagaatccgcaaaacta
ctcgcgatgttcatggttcctgtagactacccgaactctacaccaatttgttcacttgaa
cttaactggaatggaaagcacaatagagaaaatagtgaaattatacgcagaatcgaagcg
gaggttaacgttcccagtactgaacttcctcctcagcacaaagttgatctgctgacagtg
caattgaagaaattgagcctacatttggatttgattacagaaatcgatggtcagttaatg
aagaaaggaggcggaagttggcagtcgcagtctaaaccagaatttgcagccgagaaaatg
attccccaattgataaaaggccatgatagagcatatccaacaaaatatgacacaggatct
ggattctttctgcaccattaa
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