Daphnia pulicaria: 124338119
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Entry
124338119 CDS
T08670
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
dpz
Daphnia pulicaria
Pathway
dpz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124338119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124338119
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
124338119
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
124338119
NCBI-ProteinID:
XP_046648147
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Position
4:19207592..19208993
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AA seq
232 aa
AA seq
DB search
MACIQSCTNRVGWPKSEIKTEIKTEMSNMKFNQGSLTLHRTINLYPLSNYTFGTKDPLFE
RDPSVPARFQRMREEFDKVGMRRSVEGILLVHEHGLPHVLLLQLGTTFFKLPGGELNPGE
DDIEGLKRLLTEILGRQDGVVQDWLIEDSVGNWWRPNFEPPQYPYIPPHITKPKEHKKLF
LVQLQEKALFAVPKNYKLVAAPLFELYDNSQGYGPIISSLPQTMSRFDFIYM
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcatacaatcctgtacgaatcgcgtcggttggcctaaaagtgaaataaaaacc
gaaataaaaactgaaatgtcaaacatgaaattcaatcagggatctttgacgttgcacaga
actatcaatttgtaccctttgtcaaactacacatttggaaccaaagatcctttatttgaa
agagatccatcagttcctgcacgatttcaacgaatgagggaagaatttgataaagttgga
atgagacgaagtgtagaaggcatcttactagttcatgaacatgggctacctcatgttttg
ttgttacagttgggaaccactttctttaaactgccagggggagagttaaacccaggagaa
gatgatatcgaagggttgaagagactactaacagagattttaggaagacaagatggtgta
gtgcaagattggcttattgaagattcagtcggaaactggtggcgtccaaattttgaacca
cctcaatatccatatatacctccacacataacaaaaccaaaggagcataagaaacttttc
ttggttcagcttcaagaaaaagctctcttcgcagtacccaaaaattacaaacttgttgct
gcacccctttttgaattatacgacaattctcagggatatggtcccatcatatcctctctt
ccacaaacaatgagcagatttgatttcatatacatgtaa
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