Daphnia pulicaria: 124338224
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Entry
124338224 CDS
T08670
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124338224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124338224
03009 Ribosome biogenesis [BR:
dpz03009
]
124338224
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124338224
Spliceosome [BR:
dpz03041
]
Complex A
U1 snRNP components
U1 related factors
124338224
Complex B
124338224
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
Pre-60S particles
Helicases
124338224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
DUF6505
Motif
Other DBs
NCBI-GeneID:
124338224
NCBI-ProteinID:
XP_046648266
EnsemblRapid:
LOC124338224
LinkDB
All DBs
Position
4:14664928..14668725
Genome browser
AA seq
589 aa
AA seq
DB search
MFRTVFLSSRAVLRYAISKSSTRHLRASSFQQDSLSQVIRVYSPSICTFQRSFCSAEENT
SEMSFRDRKSGGSDFRGGARGGGSSSFGGSSFGGGGNRDFKKMQPGEKLRKPRWEMDRLQ
PFEKNFYKPHPNLTVKSVHDIEQYRASKDITIRGRDVPFPITSFDEASFPDYVMTEIRRQ
GFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPAIVHINHQPYLEPGDGPIALI
LAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIERGVEIMIATPGRLIDFL
EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRQLAEE
FLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQEIGAEDENKTIIFAETKR
KVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILVATDVAARGLDVDDVKF
VINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQAQDLVNVLTEANQVVNPKLY
ELASSNRGGGGRSRWGGGGGYGGRGGYGGGNRGYGGGQSYNSGRSWVER
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgttccgaacagtctttctttcgtcgagagccgttctgcgctacgcaatctccaaaagt
agcaccagacatcttagggcttcgtcgtttcagcaagactctttatctcaagtcatccga
gtctattcaccatcaatttgcacctttcaacgttcattttgcagcgcagaagaaaacaca
tccgaaatgtctttcagagatcgtaaaagtggtgggtcagatttccgtggaggagctcgt
ggagggggttcttccagtttcggaggttctagtttcggaggtggtggcaatcgggacttt
aagaagatgcaacccggagagaagctacgtaaaccaagatgggagatggatcgtcttcaa
ccgttcgagaagaacttttacaagccacaccccaacttgactgttaagtccgttcacgac
attgaacagtacagggctagcaaagatatcactattcgtggtagggatgttccattcccc
atcacttcctttgatgaagcaagcttccctgactacgtgatgactgagatcagacgtcaa
ggctttaaggagccaacatctattcaggctcaaggctggcctatcgctctgagtggatca
aacatggtcggcattgcccaaactgggtcaggaaagacattggcttacacacttccagct
attgttcacattaaccatcaaccctatcttgaacccggagatggaccaattgccctcatt
ttggcacccactcgagaattggctcaacagatctcatccactgccaaggattttggatca
tcatctcgcattcgcaacacctgcgtgttcggtggagctcccaaaggcccacagttgcga
gatatcgaacgcggtgtggagatcatgattgcaactcctggtcgccttatcgattttctc
gaagctggcaagactaacttgcgccgttgtacctatttggttttggatgaagctgatcgg
atgcttgacatgggtttcgagccccagattcgtaaaattatcgagcagattcgaccggat
cgtcaaacgctcatgtggtccgctacctggccaaaggaagtacgtcagctggctgaagaa
tttttgacagactacattcagatcaacgttggatccctgacactgtcggctaaccacaac
attttgcaaatcattgacgtctgccaagagcatgaaaaggaaactaagctcatgaccctg
cttcaagaaatcggtgccgaagatgagaacaagactattatttttgccgaaaccaagagg
aaagttgatagcattacaagagccatgcgccgtgatggatggccggcgatgtgcattcat
ggtgataaggcgcaacctgagcgtgattgggttttaaacgaatttcgctcaggcaaagcg
ccaattttagtagctactgacgtggctgctcgtggtttagatgtggatgatgtcaaattt
gtgatcaacttcgactaccccaactgctccgaggattacgtccaccgtattggtcgtact
ggccgttcacaacgcacaggaaccgcgtacacatttttcactcccaacaattccaagcaa
gcccaggatttggtgaacgttttgacagaggctaaccaagttgtcaatccaaaactctac
gaactcgcatcttccaatcgcggtggaggaggtcgttcccgatggggaggcggtggaggc
tatggtggccgtggaggatacggaggtggaaaccgaggatatggtggcggacagtcttac
aactctggccgttcttgggtggagcgttaa
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