KEGG   Daphnia pulicaria: 124340507
Entry
124340507         CDS       T08670                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
dpz  Daphnia pulicaria
Pathway
dpz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dpz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124340507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dpz04121]
    124340507
Enzymes [BR:dpz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124340507
Ubiquitin system [BR:dpz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124340507
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124340507
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd zf-C3HC4_2 Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_C zf-C3HC4 Beta-prop_CAF1B_HIR1 zf-RING_UBOX Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd zf-RING_2 zf-C3HC4_4 Beta-prop_IFT122_1st zf-C3HC4_3 PEP5_VPS11_N zf-RING_5 Beta-prop_DCAF12 WD40_RFWD3 zf-RING_10 RING_XB3-XBAT31 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WD40_like Beta-prop_NUP159_NUP214 Beta-prop_Vps41 zf-rbx1 zf-Nse Sina_RING zf-RING_6 TRAF3_RING DUF1272
Other DBs
NCBI-GeneID: 124340507
NCBI-ProteinID: XP_046649029
LinkDB
Position
5:complement(6164573..6169176)
AA seq 602 aa
MAGRGVKRGPQSLLFGGVKDTYEDRDSDLLCPVCLDMMSEPYVTTCGHSFCHGCIVRSLE
LASKCPKCSGPLDSSGRNPSVFPNVTLNALITKQKKKLVESQDGNILMKDFTNLLDTRDW
HPSELVRMQEVLLRKQCDLDGERKLTEAQLLNEFLQQLKTKKNNELRNVQQELEVLDKDL
NMAQTLNPGIDSAAIKVENYEVNETAFNSSIASTPLSISQRRVRMHQHFEDLEGKYWALR
NNRLGGEEEEKKSLLDFQSNLNQLTRWSRLRPLANLSYGSELLNTAHIVSSIEFDRDADF
FAIAGVTKRIKVYDYAVVVRDAVDLHYPVMEMVAGSKISCISWSAYHKSVLASSDYEGSV
SVWDASVGTRLRVFQEHEKRCWSVDFNRMDSHLMASGSDDSRVKIWSLNAEHSVATLEAK
ANVCCVKFNPYSRYCLAYGAADHCVHYVDLRQPKEPLRVFKGHRKAVSYVKFLSDRELVS
ASTDSQLKLWTVEDNVSCRSFRGHTNEKNFVGLSTTDGSQDDRRDLIACGSENNALYLYS
KGLSQPLLHYRFDVVKSALLLDKERAEQEESAEFVSAVCWKPDSNVIVAANSQGTIKILE
LV
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggcaggccgtggggttaagaggggtccccagtctcttctgtttgggggtgtaaaggac
acatatgaagacagagatagtgatcttctctgccctgtctgcttggatatgatgtcggaa
ccttacgtgactacgtgtggccacagcttttgccatggatgcattgtcagaagtctggag
ttagcaagcaaatgtcccaagtgcagcggtcctctcgacagtagtggccgaaacccatcc
gttttccccaacgtaaccctcaacgcattaataaccaaacagaagaagaaattagtcgag
agtcaagatggaaatattttgatgaaagacttcaccaatctgttggatactcgggattgg
catccatcagaattagttcgcatgcaagaagttttgcttcggaaacaatgtgatcttgat
ggagaacgaaaactgaccgaagcccagctacttaacgaattcctccaacagctcaaaacc
aagaagaacaacgagttgagaaatgttcaacaagaactagaggtgcttgacaaggattta
aatatggcgcaaaccctaaatcctggcatcgattctgctgcaattaaagtggaaaattat
gaagtcaacgagacggccttcaattcatccatcgcgtccacaccgttaagcatcagtcaa
cgtcgtgtaagaatgcaccaacatttcgaagatttagaggggaaatactgggcacttcgg
aacaatcgtctcggtggtgaggaagaagaaaagaaaagtttactcgactttcaatctaat
ttgaaccagttaacccgatggagtagactaaggcctttggctaatttgagctacggaagc
gaactcctcaacacggcacacattgtcagctcgatcgaattcgaccgagatgctgatttt
ttcgccatcgctggtgtgaccaaacgcatcaaagtctacgactacgcagtggttgtacgg
gatgcggttgatcttcactatcctgttatggagatggtggctggctcgaagatatcgtgc
atatcttggagtgcctaccacaaatcggtcctggcaagctccgactacgaaggcagcgta
tccgtttgggatgcgtccgtcggtactcgtctgagggtctttcaagagcacgagaaacgc
tgttggagtgtcgattttaatcgcatggacagtcacttgatggccagtggcagcgacgat
tcccgagtcaaaatctggagcttaaacgctgaacactctgtggccactttggaagctaaa
gccaatgtctgttgcgtcaaattcaatccgtactcgcgttattgcttagcctatggcgca
gccgatcattgcgtccattacgtcgacctacgtcagcccaaggagccactacgggtcttt
aaaggccatcgcaaagccgtctcttacgtcaagtttcttagtgatcgcgaattagtgtcg
gccagcacggatagccaattgaaattgtggacggttgaagacaacgtttcatgtcgatct
tttcgcggacacacaaacgagaagaactttgtgggcctctcgacgacggacggcagccaa
gatgatcgacgtgatttgattgcttgcggttctgaaaataatgccctttacctctactcg
aagggactcagccagcctttacttcactatcgtttcgacgttgttaaaagcgctttgcta
ttggacaaggagcgggccgagcaagaagagagcgccgagtttgtttctgccgtttgttgg
aaacccgactccaacgtaatcgtcgctgccaacagccagggaactataaaaattctcgaa
ctggtttag

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