Daphnia pulicaria: 124340819
Help
Entry
124340819 CDS
T08670
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
dpz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124340819
03015 mRNA surveillance pathway
124340819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124340819
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124340819
5.6.2.5 RNA 5'-3' helicase
124340819
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124340819
mRNA cycle factors
Common to processing body (P body) and stress granule
124340819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
NPHP3_N
SLFN-g3_helicase
ATPase
AAA_16
nSTAND3
DEAD
Helicase_RecD
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
124340819
NCBI-ProteinID:
XP_046649475
LinkDB
All DBs
Position
5:complement(2330941..2336090)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVDTFGPNSQTLTFLDTEENDLLGADTQGTDFDFRDFTLPSQTQASQIDHASLHKSMGK
HQANGLDTIDSQLATAMKNLNDLQFEEEDEEGYYSKDLPPHACKYCGIHDPGCVVMCNVC
KKWFCNGKGNTSGSHIVNHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDIEQWKPLIADRCFLSWLVRSPSEAEQMRARQLTAQ
QLNRLEEMWKEKPEASFEDLERPGVDEEPQHVLLRYEDGYQYQNIFGPLVKLEADYDRRV
KEAQTQDNVHVRWDVGLNKKTVAYFSLQKTDSDMKLMHGDELRLRYLGELHKPWTGLGHV
IKLPDNYSEEVGIELKNSNGAPTECSTNFVVDFVWKSTSFDRMQSALRKFAVDESSVSAY
IYHRLLGHEVEDVVFRLHLPKHFSAPDLPELNRSQVFAVKQAVQRPLTLIQGPPGTGKTV
TSATIVYHLAKLGSGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPVSFLA
LHNQVRCLEGASELRKLVQLKEEVGELSQGDEKRYRMLKRQAERELLEAADVLACTCVGA
GDVRLARIKFASILIDESMQATEPECMVPVVLGARQLILVGDHCQLGPVVMCKPAAKAGL
SQSLFERLVVLGIRPFRLEVQYRMHPRLSEFPSNFFYEGSLQNGVCAEDRILRGVDFPWP
MPDRPMFFYVTLGQEEIAGSGTSYLNRTEASNVEKIATRFLRSGVKPEQIGIITPYEGQR
AYLVQYMQHQGSLHAKLYQDIEIASVDAFQGREKDLIIMSCVRSNENQGIGFLNDPRRLN
VAMTRARYGIIIVGNPKVLAKQPVWNHLLHFYKENHVLTEGALNNLKESMMQFPKPKKPI
NSFNPGQHFMSTAVYDARQAMVPGSVYDRSGGGQPPNNNGMNTYIPRATANVGDPYSRLH
DPIGYIAPERAQAALSAMPVPLGVFMNMTHVPPRFHGQQQQGMHGSSKSNQRPKDNARGS
GPRAGKAASKGSSSLFTQSLSQNTQDVSTQPFSQGGMALTQGMSQGMSQTVSGFGALSQS
GLSQLDPSQDAYMSSDYQSQMDGLLSQDSTYQGGRSAFFRHGSQFTQPY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacacttttgggcccaattcgcaaacgctcacgtttctcgacaccgaggaa
aatgatttacttggggcagacactcagggaactgatttcgattttcgcgattttactttg
ccgagtcaaacccaggcttcacaaattgatcatgccagccttcacaaatcaatgggaaaa
catcaggcaaatgggctggacacgattgattctcaacttgcaactgcaatgaaaaatttg
aacgatctccagtttgaggaagaagacgaagagggctattacagcaaagatttgccacca
catgcatgcaagtattgcggcatccatgatcctggttgtgttgtaatgtgtaatgtttgc
aagaaatggttttgcaatggcaaaggtaatacttctggctctcacattgttaatcatctt
gtacgagccaaacacaaggaggttacattgcatcgtgatggaccgttgggtgaaacagtt
ttggagtgctattcttgtggagtcagaaatgtttttgttttggggttcattcctgctaaa
gcagattcagttgttgtgctgctgtgtcgccaaccttgtgcagctcagtcatcattgaaa
gacatgaactgggacattgaacaatggaaaccacttatagctgatcgttgtttcctcagt
tggcttgttcgaagcccttcagaggccgaacagatgagagctcgtcaattgacggcccag
caattgaaccgtttggaagagatgtggaaagagaaacctgaggctagttttgaagacctg
gaacgtcctggcgttgacgaagaacctcagcacgtattgctgcgatatgaggatggctat
caatatcagaatatttttggtccgctagtgaaacttgaagcagactacgaccgacgagtt
aaagaagcccaaactcaagacaacgttcacgttcgctgggatgttggtcttaataaaaag
actgtcgcttactttagtcttcaaaagacagatagcgatatgaaactgatgcatggtgac
gaattaagattgcgttaccttggggaactacacaaaccgtggactggtttggggcacgtg
attaaacttccagacaactacagcgaagaagtcggaattgaattaaagaattcaaacgga
gctcctacagaatgttccacaaatttcgtcgtggattttgtctggaaatcaacgtctttt
gataggatgcaatcggccctgcggaaatttgcagttgacgaaagtagcgtttcagcttac
atttatcatcgtttgcttggtcacgaggttgaagatgtcgtattccgcctacatctccct
aaacatttctctgctcctgacttgcctgagctgaatcgatctcaggtttttgctgtaaaa
caagcagttcaacgtccattgactttaattcaaggacctcctggtaccgggaaaacggtt
acatcggccaccatcgtgtaccatttggctaaactaggatcagggccagtattagtttgc
gctccgtccaacattgctgttgaccaattgactgaaaagattcatcgaactggtctgaaa
gtggtccgtttgtgcgcgaaatccagagaggccattgattcacccgtctcgttcttggcc
ttgcataatcaagttcgatgtcttgaaggagcttcagagttgcgaaaattggtccagctt
aaggaggaagtcggtgagctttcacagggagatgaaaagcgataccgcatgttaaagcga
caagcagaacgagagctactcgaagcagcagatgtattggcgtgcacttgtgttggtgct
ggtgatgttcgcttggctcgcattaagtttgcatctatcttgatcgatgaatcaatgcaa
gctactgaacctgaatgcatggtccctgtcgtcctaggagcaagacagctcattctggtt
ggagatcattgtcagttgggcccagtggtgatgtgtaaaccagctgccaaagctggtctc
tcgcaatcactgtttgaaagactggtagtacttggcatccggcccttccgtttggaagta
cagtaccgtatgcacccaaggttgtctgagtttccttccaacttcttttacgagggatca
ctacagaatggtgtttgcgcggaagatcgaatccttcgcggggtagatttcccttggcca
atgccagataggcccatgttcttctacgttacattgggtcaggaggaaattgctggatcg
ggtacgtcttatttgaacagaacggaagcgtcaaatgtggaaaagattgctacacgtttt
cttcgatccggagtcaaaccagaacaaattggcatcatcacaccgtacgaaggacaaaga
gcttatcttgtacagtacatgcaacatcaaggatcactgcatgctaaattataccaagat
atcgaaatagctagtgtagatgctttccagggtcgcgagaaagacctcatcatcatgtcg
tgtgttcgctcaaacgagaaccaaggaatcggttttctcaacgatccccgtcgtttgaac
gttgctatgactcgcgcccgttatggaatcattattgtaggcaatcctaaagtgttggcc
aagcagcctgtatggaatcacctgcttcacttttacaaagaaaatcatgttctaactgag
ggagctctcaacaacctcaaagaatccatgatgcagtttcccaagccaaagaaaccaatt
aatagttttaatcctggtcagcatttcatgtccacagccgtctacgacgcacgccaggcc
atggttcctggttccgtctatgatcgttcgggtgggggtcaaccaccaaacaacaatggt
atgaatacttacatacctcgagccacggccaatgttggagatccgtacagccgtttgcac
gatccaatcggttacattgctccagagagggcacaggccgctctttctgctatgcccgtt
cccttgggtgtctttatgaacatgacgcacgtcccgcctagattccatggccagcagcaa
caagggatgcatggttcatccaaatccaatcagaggccaaaagacaatgcccgaggaagt
gggcctcgcgctggcaaagccgcaagcaagggaagttcttcgctgtttacacagtcactt
tcgcagaatacacaggatgtatcaacgcagcctttcagccagggtggcatggctctcacc
caaggaatgtcacaggggatgtcgcaaacggtctcgggcttcggagcactatcgcaatcg
ggtctatcccagttagatccgtcacaagacgcctatatgtcatcagattatcagtcgcaa
atggatggactgctctctcaagactcgacgtatcaagggggccgttcagccttcttccgc
catggctctcaattcacgcagccatactga
DBGET
integrated database retrieval system
