Daphnia pulicaria: 124341833
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Entry
124341833 CDS
T08670
Name
(RefSeq) endoribonuclease Dicer-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpz03036
]
124341833
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124341833
microRNA pathway
RISC loading complex
124341833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Dicer_dsRBD
DEAD
ResIII
Helicase_C
PAZ
Dicer_platform
SWI2_SNF2
dsrm
AAA_22
Motif
Other DBs
NCBI-GeneID:
124341833
NCBI-ProteinID:
XP_046650740
LinkDB
All DBs
Position
6:20594778..20601868
Genome browser
AA seq
1588 aa
AA seq
DB search
MSPIEEPKENSIPRNYQLELYEHARRENTIVYLPTGSGKTMIAVLLIRDYAAQVNKPLAQ
DGRRVVFLVPTVILAKQQAAYIRRHTCLEVGEYYGELGVDLWKGDRWAKELEKNNVLVMT
AQLFVNAVNHGFITVGQVALLVIDECHRAVKESPMKHSLIVLNEFCQRHGAGSVPRVLGL
TAALFLEKCKPKDVTKNISKLKTSMNSIIRTAHPHKIAGYSTKPIEIICEYSSWQENTGN
SETAWLSSHIQELLDTCLMELRGDLDCDSPCPGELTDILREIKILTSIFGPYGTNHTVSI
FSKEIRRLGFQSVNNSELVNRFFKIVDVMLEEIRKICGFIFGQLSPLDRLRLFTTPHVTR
LMDILRQFSPGEIDTVAKFTPLCSIVFVERRSSANVLYHILREASQCDPGLSYLNPLFTM
GQASGNPKGKMKENHHLNQSQSKIIRQFRDGTCNLLVATSVLEEGVDVRACNLVIRFDGI
KTFCDYVQSKGRARSPNAFYILMVPTETLSPFLDTLAGFHFIEQSLMDPSSLMMSSVTDD
EPSDPQLEQLWQTIIPPYCPYPDGPRVTLLSSISLLNWYCATLPSDGSAPLAPYYVVNRI
SARRLAEMDRDHTNHLRRLGSTIQDHFRCTLLLPLNCPLRDELIGRVMPSKRLAKQEVSL
QACIRLHQLGELDDQHLMPLSKSVVLETDENVDFDFDCQLENSQGSDFYLRGVARLLDGV
IASPFYLYLFTYEVVKDSAQPENQFDPNRAQRRMGFLSSQKLPAINPFGLYSPAGQINVG
FLEVDSFLRLTLDDVKLCHRFQQFLFEKILQLPGEEQYNPSRGSYLVVPITNNRIDVAFM
NEHLDSTVPDWQPHPPSSSSSSSQVVDYFKVYGDAVVTAHHDQTKGKSSCYYVNAVRPEV
TPLSRFPNPAYTTYANYFHHRHNAIIANQSQPLLEVRKESFKTFNFLTPKYVNRKEAADD
GDGEIKSLPKGSIYFVPEFCEVHRFPASMWRQALWIPSIFYRLNSLLLADELRMEIQAKT
GLGLSVLPPNLQWEPLQMKTNGKCQQLPSQIVEKSEQNDMDEGDLMQTDMTLNREDDDVD
LKISIWNVDLFIPEVNQINSPVKSAGLKFNKKQMSTQNSSAAFADNFRFDDGPMDNCPKG
PSPGEVLQALTTSVANAGYDLERLEVIGDSFLKLAASIRVYCDSPSHFHEGKMTHLRMLQ
VCNRNLFKLGKIKSIPRFVVATKFVAKENWLPPCYFPNNTEDDCMALETDEKPNAKLWQR
ISKKSVADSVEALFGLYLTLHGIKGALKVMRWMGVNVPDPSGDEGSSSSSSSFGGTPPEP
LLLDSPQAQHLLDDHLAGFETLESSLNFRFGNRFYLLQAFSHASYHPNRMTSCYQRLEFL
GDAVFDYLITKYLYDCRLFQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVH
QAIDRFVQQQEMCDHATPDEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSL
DAVWRVFYPLIREEIEACTRVVPKSPIRTIYEKYPGKVQFKTLESLPDGRICIAVEVLNN
GRLYKGVGKNSRIAKNTAAKYALSQLGI
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgattgaagaaccaaaggaaaattcgattcccagaaattaccaactggaactg
tacgagcacgccagacgagagaacacgatcgtgtacctgccgacgggatcgggcaaaaca
atgatcgccgtcctacttatccgcgactatgcggcccaagtcaacaagccgttggcgcaa
gatggacgccgtgttgtttttctggtgcccaccgtcattctggccaagcagcaggccgcc
tacatccgccggcacacctgtctggaagtgggcgaatattacggagagctcggcgtcgac
ttgtggaagggcgacagatgggccaaggaattggagaagaacaatgtcttggttatgacg
gcccagctcttcgtcaacgcagtcaatcacggtttcatcacggtcggccaggtcgcactc
ttggtcatcgacgaatgccacagggccgtcaaagagtcgcccatgaaacactcgctgatc
gttttgaatgaattttgccagcgccacggggccggcagtgtcccgcgcgttctgggactg
acggccgcccttttcctggagaaatgcaaacccaaagacgtgacgaaaaatatcagcaag
ctaaagacctccatgaactccatcattcgcactgcacatccgcacaaaatcgctggatat
tcgacgaaaccgattgaaatcatctgcgagtattccagttggcaggagaataccggaaac
agtgagacggcctggctctcatcgcatattcaagaattattggacacttgtttgatggaa
cttcgtggagacctcgattgcgattccccctgtcctggtgaactgactgatatcctacga
gaaatcaaaattttgactagtatatttggtccgtacggtactaatcacaccgtatccatc
tttagcaaagagatccggcgactgggatttcaatccgtgaataactctgagctcgtcaac
agatttttcaaaatagtggatgtgatgttggaggaaatccggaaaatctgtggatttatt
ttcggccaattgagtccactcgatcgcctccgcctttttaccactccgcacgtgacacgc
ctgatggatattttgcgtcagttcagtcccggagaaattgacacggtggcaaaattcacc
ccgctgtgcagcattgtgttcgtcgaacgccggtcttctgccaacgtcctttaccacata
cttcgagaggctagtcaatgtgatcctggtctttcctatctgaatccgctattcacgatg
ggccaggcttcgggaaatcccaaagggaaaatgaaagaaaaccaccacctcaatcagagc
cagagtaaaatcattcgccaattccgagatggcacctgcaatcttttagtggccacttcc
gtcctggaggaaggtgtggacgtccgagcgtgcaatctagtcatccgtttcgacggcatt
aaaacattttgcgactacgtccagtccaagggacgagctcgttcgcccaacgctttttac
attttgatggtgccgacagagacgctgagcccttttctcgacacgctggccggcttccac
tttatagaacagtctctgatggacccttcatctctgatgatgtccagcgtgacggacgac
gaaccgagcgatccacaactggaacaactctggcaaacaatcataccgccttattgtccc
tatccggacggacctcgcgtcactcttttgagttccatttcgttactaaattggtattgc
gctactttgccgtcggatggatcggcgccacttgctccttattacgtggtcaaccgaatc
agcgctagaagactagctgaaatggacagggatcacaccaatcaccttagaaggctagga
tcgaccatccaggatcactttcgatgcactttactgctgccgctcaattgcccgttgaga
gacgaattgatcggtcgagtcatgccttccaaacggctggccaaacaggaagtgtctctg
caggcctgcattcgcctccaccagctgggcgaattggacgaccagcatttgatgccgctc
agtaaaagtgtggtgctggagacggacgaaaatgtcgacttcgatttcgattgtcaattg
gaaaattcacaaggaagcgacttctacctcagaggagttgcccggctcttggatggcgta
atcgcctcgcccttttacctttacttgttcacctacgaagtggtcaaggattcggcccag
ccagaaaaccagttcgaccccaatcgcgcccagcgccggatgggtttcctgtccagccag
aaattgccagcgatcaatccgttcggattgtactcgccggctggccagatcaacgtcgga
tttctggaagtcgacagcttcttgaggttgactctcgacgacgtcaaactctgccaccgt
ttccagcagtttctcttcgaaaagattctacaactgccgggcgaggagcagtacaatccg
tcgcggggcagttacttggtcgtccccatcacaaacaatcgaatcgacgtggctttcatg
aatgagcacctcgattcaaccgtccccgattggcagccacacccgccatcatcgtcgtcc
agcagcagccaagtcgttgactatttcaaagtgtacggcgacgcggtggtcaccgctcac
cacgaccaaaccaaagggaaatcttcctgctactacgtgaatgccgttcgtccggaagtg
actccactttcccggttccccaatccggcttacaccacgtacgccaactatttccaccat
cgccataacgcaatcatcgcaaatcagagccagccgctcctggaagtcagaaaggaatcg
ttcaaaacgttcaattttctcacgccaaagtacgttaaccgcaaagaagcggcggacgac
ggcgacggcgaaataaaatcactcccaaaggggagcatctacttcgtgccggaattctgt
gaagttcaccgttttccggcttccatgtggagacaggcgctgtggattccgtccatcttt
tatcgtttgaactcgttgctattggccgacgagctgaggatggaaattcaagccaaaacc
ggcctcgggctatctgttttacctccgaatcttcaatgggaacctctacagatgaaaacc
aatggcaaatgccagcagctaccgtcacaaattgttgagaaaagtgagcagaatgatatg
gatgaaggcgatctgatgcaaactgatatgacgttaaatagagaagacgacgatgtggat
ttgaaaatttccatttggaacgtggatttatttattccagaagttaaccaaattaattcg
ccggtgaaatcggccggactgaaatttaataaaaagcaaatgtcaactcaaaactcttca
gccgcttttgcggataactttcgttttgacgacgggccaatggacaattgcccaaagggt
ccttctccgggtgaagttttgcaagccttaaccacgtcagtagccaacgccggctacgat
ttggaacgtttagaagtgatcggcgattcgttcctgaaattggcggccagcattcgcgtt
tattgcgactcgcccagccactttcacgagggcaagatgacccacctgcggatgcttcaa
gtgtgcaatcgaaatcttttcaaactgggcaaaatcaaatcgattccgcgattcgtcgtg
gccaccaaattcgtggccaaagagaattggttgccaccctgctactttccgaacaacact
gaagatgactgcatggcattggagaccgacgaaaaaccgaatgctaaactgtggcagaga
atatccaagaaatctgtagcggattcggtggaagctctattcggcttgtacctgacgctc
cacggaatcaaaggcgctctcaaagtgatgcgctggatgggagtcaacgttccggatccg
agtggcgacgaaggttcctcctcttcttcttcttctttcggtggcactccaccggagcct
ttgttgctcgattcgccgcaggctcaacatcttctggacgaccatctcgccggcttcgag
accctggagagtagcctcaactttcgctttggcaatcgcttttatctgctgcaagccttc
agtcacgcttcgtatcatcccaatcggatgacaagttgctatcagcggctcgagtttctg
ggcgatgccgtctttgactatctgattactaaatacctgtacgactgccggctgtttcaa
ttgactcccggcgcgctgagtgacatgagatcggcgctggtcaacaacgtcaccttcgcc
gtgctggccgtccgcaatggattccatcgctatctgaaacacctggtccccgacgtccac
caagccatcgatcgattcgttcagcaacaggaaatgtgcgatcacgcaacgcccgatgag
tttttcctgattggaactcacgatgacccgatggccgaagctgtcgaagttcccaaagtc
ctgggcgatatttttgaatcgctggtcggagctgtgtttctcgattcggacatgtcgctg
gacgcggtttggcgagttttctatccgctcatccgggaagaaatcgaagcttgcacgcga
gtagttcccaagtctccaattagaacgatttacgaaaaatatccggggaaggtccagttc
aagaccctggagagccttccagacgggcgtatttgcatagctgttgaggttctgaataac
ggtcgattgtacaaaggagtcggaaagaattcgcgaatagctaaaaacaccgcggccaag
tatgcgcttagtcaactcggcatttga
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