Daphnia pulicaria: 124341920
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Entry
124341920 CDS
T08670
Name
(RefSeq) LOW QUALITY PROTEIN: DNA excision repair protein ERCC-6-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
dpz
Daphnia pulicaria
Pathway
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
124341920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpz03036
]
124341920
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124341920
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
124341920
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
124341920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
HHH
Motif
Other DBs
NCBI-GeneID:
124341920
NCBI-ProteinID:
XP_046650832
LinkDB
All DBs
Position
6:complement(13113666..13123118)
Genome browser
AA seq
1662 aa
AA seq
DB search
MASVKETGSFFTHGDSKQYEFVLTLYPQALKLKAKEKKLKKPEDLLKLDAWYQEELPKKI
RARGKDAHLTHDELVQCMKWKLTRGQWRPRLQNLVQLNTPHAVEDQSREAFKQMVLKGEK
GIESAIHSLAKLKGVGPATASVHPSKSRXGCYFCLQFRFFSPTCENKRAKRGKFYSQMIN
LVMINTPKAVATETRKALRKLPNLESALNNLSSLKGVGTTMATAILAAAAPEIAPFMADE
CLMAIPDIEGLDYTAKEYLKYVQHIRTVVDRLNAENQNSAWSPHRVELALWCHYVTRKLE
PSLLDGIPGLEEESKENGTAKSSDVANGSPTAVDGKDSEDSSSGPLALANTEDSSEATND
SLSVVINSEETSREPTTNGNGNDTTNDNTNDNTTNDHDSSLADGVPTNGASVVAPDDNAA
VVGGRDDNAVIGGDDNAVVDQEELSLEPSASTAQKQPPESNSVYFEMEEPNESPESVIAS
VVNENETPRVLPNFQINRDIIESVAIENQSEELRSLGITVYDQSKFEESILRQVDDALEE
QERHKKVINAKKILASKDGDKEKTVADKPLKIRKETEKEKMVRLGQMTPFGTVLGSGGKT
TELTSFEKYMLEQEKLQNVKTKVSTRKGKTLKSPASVVNLSPGKNIVKRVAPKSPTKTSS
KKGYHNLNESDSDYVPSDEESPKPKKPGGLQRKKRKQEIIEKEWNTDDSNWEYSEDEETP
KKRKSKKTSDRIVDDGNINDFRERLAVLPHFETENEDCEEFEGGYRIPLSIWNQLYNYQK
VGVRWMYELRLQRCGGILGDEMGLGKTIQVVAFLAGLAHSKLLTRLSSYRGLGPVLLITP
ATVMHQWVKEFHKWYPPIRVAILHESGSHTGTRDALIKSINSTNGVLITSYTGVPQYSER
LLQLDWDYVILDEGHKIRNPDAQATLVVKQFRTSHRFILSGSPMQNNLKELWSLFDFVFP
GKLGTLPIFLQQFAVPITQGGYSNASQVQVATAYKCATVLRDTINPYLLRRMKADVKDHL
QLPDKNEQVLFCRLTQEQRQLYQTYLDSGEIKSIIDGRLQIFVGLTNLRKICNHPDLFDG
GPPGCKKEFNESDPKKQFGCVERSGKLLVVESLLKIWKEQNHRVLLFSQSRQMLDILECF
IRQQSYNYLRLDGTTSIGSRQPMIEKYNKSADIFVFLLTTRVGGLGVNLTGANRVIIYDP
DWNPSTDTQARERAWRIGQQKDVTIYRLLTSGTIEEKIYHRQIFKQYLTNRVLKDPKQRR
FFKSNDLYELFTLKDTDNQCTETEAIFAGTGSEVATNPHDGPPSGKMDKPSDDEWMRQWK
KEREKRELEWKKSLDKREKQKTKMTETEEEKRRRKKREAKEKKEKKRIKIDGAKVKHVVK
MSSHNSVAVDLDDGSTPSTSSNNQDDYVLQRLFAKTGVMSALRHDSIIDAGDPDYALVEG
EAERVAKEAVQVLKSSRRNCYRAEAGIPTWTGTSGAVRSAGPTDTKKPRFGAKKKSVLPS
VGAYTSSHHAEMSKESPGAVDAIDLPIPGSSNAVLSSQDLLSRMQARNRLLGLPGNSADD
CTAGSSFRSANEEESLILETQSAPLEFATGVDYHTMTENIRSFVAFRGVTPGQVTTTDIL
SEFDGKLPLRGAPLFRALLNQLCSFTRDIHNQGIWQLKPEFQ
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgtcaaagaaacggggagttttttcactcatggcgattcgaaacagtatgaa
tttgtcctaactctctacccacaagccttaaaacttaaagccaaggagaagaaactcaag
aagcccgaagacctgctgaaactcgacgcatggtatcaagaggaattacccaagaaaatt
cgagctcggggtaaagacgcacatctgacccacgacgaactggttcagtgcatgaaatgg
aagttgacgagaggtcaatggagaccacggctgcagaatcttgtccaactgaatacgccc
catgcagttgaagaccaaagccgtgaagctttcaaacaaatggtccttaaaggcgaaaaa
ggcatcgagtctgctattcatagtttggcgaaattgaagggtgttgggccggctacggct
tcagtccacccttcaaaatcccggtaagggtgttatttttgtttacaatttcggttcttt
tctccaacttgcgaaaacaaaagagcaaagagagggaaattttactcgcaaatgatcaac
ttggtgatgatcaacactcccaaagcggtggccaccgagacccggaaagctctgcgcaaa
ctacccaacctcgaatccgctttgaataacctgagtagtttgaaaggcgttggaacaacc
atggcaacagctattttggcagctgccgctcccgaaatagctcctttcatggccgacgag
tgcctgatggcaatccctgatatcgaaggcctcgactacaccgctaaggaatacctcaaa
tatgttcagcacatccgaacagttgtggaccgactcaacgccgagaaccaaaacagtgcg
tggagccctcacagagtggaactagccctttggtgtcattacgtcacccgtaagctagag
ccatctctgctggatggtattcctggtctggaagaggagagcaaagaaaatggtacggca
aaatcgagtgatgttgctaacggttcccctacagctgtagatgggaaagacagtgaagat
tcatcttccgggccgcttgcgctggccaatacagaggattcctctgaggcaacaaacgat
tccttatcggtggtgattaattctgaggagacaagtcgggagcccacgactaatggtaac
ggtaatgatactaccaatgataacaccaacgacaacaccaccaatgatcacgattcgtca
ctggctgatggcgtaccaaccaatggtgcaagtgtcgtggcaccagatgacaatgctgct
gtcgtcggagggagagatgacaatgctgtcataggaggagatgacaatgcagttgtcgat
caagaagaattgtctttggaaccttctgcctcaacggcgcagaaacaaccacccgaatcg
aactcggtctattttgaaatggaagaacctaacgaaagtccagagagtgtaattgcatcc
gttgtgaatgaaaatgagaccccgcgagtcttgcccaactttcaaatcaatcgtgatatt
atcgaaagtgtagctatcgaaaatcaatcagaggaattgagatctctgggtatcaccgtg
tatgatcagtcgaaatttgaagaaagtattctacgccaagttgacgatgcacttgaggaa
caagaacgtcacaagaaagttattaatgccaagaaaatattggcttctaaagatggtgac
aaggaaaaaactgtggctgacaagccacttaagatacggaaagaaacagaaaaggaaaag
atggtccggcttggtcaaatgacaccttttggcactgttctaggttctggtggcaaaact
actgagttgacgagctttgaaaaatacatgttggaacaagaaaagctccaaaatgtaaag
acaaaagtttcaactagaaagggcaaaaccctcaaaagccctgcatctgttgtgaacctt
agcccggggaaaaacatagttaaaagagtagccccaaaatcaccaaccaagacatcatca
aaaaaaggatatcacaatttaaatgaatccgacagtgattatgttccaagtgatgaagaa
tctcccaaacccaaaaagcctgggggccttcaaagaaaaaagaggaaacaagaaataatt
gagaaagaatggaatactgatgatagtaattgggagtattctgaggatgaagaaacaccc
aaaaagagaaagtccaagaaaacttcagaccggattgtcgacgatggaaatatcaacgac
ttccgagaaagactagccgtactcccgcatttcgaaacggaaaatgaagattgtgaagaa
ttcgaaggtggttatcgaatacctctctccatctggaatcaactgtataattaccaaaag
gtaggtgtccgatggatgtacgagttgaggttgcaaaggtgtggtggcattctcggtgat
gaaatgggattgggaaagaccattcaggtagtagcatttctcgcaggattggcacatagc
aaattgcttactcggctatcgagttatcgcggactcggtccagttctcctcattactccg
gctacagtgatgcaccaatgggtcaaagaattccacaaatggtaccctcctattcgagtt
gcaatacttcacgaatctggttctcacacgggtaccagagatgcccttatcaaatccatc
aattcaaccaatggagtactcattacgtcgtacacaggcgtgccgcagtactctgaacgt
ttgctgcaacttgattgggactatgtcatcttagatgagggacacaagattcgtaatccg
gatgctcaagcgactttggtggtcaaacagttccgcacttctcaccgtttcattctcagt
ggatctcctatgcaaaacaatttgaaggaactttggtcgctgtttgactttgttttcccg
ggaaagttgggaacccttccaatttttctacagcaattcgcggttcccattacacaaggt
ggttactctaatgcatctcaagttcaagtggctactgcctacaagtgcgctacagttttg
agggataccatcaatccgtatctgctgcgcaggatgaaagctgatgtcaaagatcatctc
cagttacccgacaaaaacgaacaggttttgttttgccgcttaacccaagaacaacggcag
ttgtaccaaacttatttggattccggggaaatcaagagcatcattgatggacgcttgcaa
atttttgtcggcctcacgaacttgcggaaaatatgcaaccatccggatttatttgacggc
ggaccgcctggttgtaagaaagagttcaacgagagtgaccccaagaaacagtttggatgt
gtcgaaagatcagggaaattattagtcgtcgaatctctattgaaaatctggaaggaacag
aaccaccgtgtcttgcttttttctcaatcaagacagatgttggatattttggagtgcttc
atacgacagcaaagctacaactatttacgattagatggaactaccagcattggatcacgg
cagcccatgattgagaaatacaacaaatcggcagatattttcgtctttttgctcacgaca
cgtgttggaggtttgggtgtgaatctgacaggtgcgaatcgagtcattatatatgacccc
gattggaatccgtctaccgacacccaagcccgtgaacgcgcctggagaattggccagcaa
aaggacgtcaccatttatcgtttactaacttctggcaccatcgaagaaaagatctaccac
cgccaaattttcaagcaatatctcaccaatcgtgtgctcaaggatcccaagcaaagacgt
ttcttcaaatcgaacgacctctacgaactcttcactctgaaagataccgacaaccagtgc
acagagactgaagcgatctttgcgggaacgggttctgaagtggcgaccaatccgcacgac
gggccgccatccggcaaaatggacaagcctagcgacgacgaatggatgcgtcagtggaaa
aaggaaagggaaaagagagaactcgaatggaagaaatcgctggacaaacgcgaaaaacaa
aagacgaaaatgactgagacggaagaggaaaagcggagacggaagaaacgagaagccaaa
gaaaagaaggaaaagaagcgaatcaaaattgacggtgcgaaagtcaaacacgttgttaaa
atgagtagccacaattcagtcgctgtcgatttggatgatggcagcactccatccacttca
tccaataaccaggatgactatgttctccaacggctctttgccaagacaggagtaatgagt
gccttacgccacgatagtattatcgatgccggagatccagactatgcgctagtggaaggt
gaagcggagcgagtcgcaaaagaagctgtccaagttttgaagagttctcgccgtaattgt
tacagagccgaagcaggaattcctacgtggactggaacaagcggagctgtccgttctgca
ggccctacagacacgaagaagcctcgctttggtgccaaaaagaaatccgttcttccatct
gtcggcgcttacacttcatcacaccatgcggaaatgtcgaaagaatcacctggagctgtt
gatgccattgatttgccgattccaggaagttcgaatgcggttctcagttcacaagatttg
ctcagtcgaatgcaagcgaggaaccggttgctgggcttgccaggcaacagtgcagatgac
tgtacagcaggctcttctttccgatctgccaatgaggaagagtcgctaatcttggaaacg
caatcggctccgttggaattcgccacgggcgtcgactaccacaccatgaccgaaaatatt
cgatcctttgtggcctttcgtggtgtcacacctggccaagtgacaacgaccgatatcctc
agcgagtttgacggaaagctcccccttcggggcgctcctctcttccgtgccctcctcaac
caactgtgcagtttcactagagatatccacaaccaaggaatctggcagctgaaacccgaa
ttccaatga
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