Daphnia pulicaria: 124342055
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Entry
124342055 CDS
T08670
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
dpz
Daphnia pulicaria
Pathway
dpz03013
Nucleocytoplasmic transport
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124342055
09122 Translation
03013 Nucleocytoplasmic transport
124342055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124342055
03041 Spliceosome [BR:
dpz03041
]
124342055
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124342055
Spliceosome [BR:
dpz03041
]
Complex C
Other components
EJC/TREX
124342055
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124342055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
124342055
NCBI-ProteinID:
XP_046650981
LinkDB
All DBs
Position
6
Genome browser
AA seq
1227 aa
AA seq
DB search
MKYESRVNHLNWESIKFQDYSAEECKNRWLHVQTHMRNYRILAEVLEDAESWVDGPCYNN
LNKRRKNNQKHPDDQPKKPRTSSMLPSMEQKDAVLEKPSGLEVKNEMAPKTLISPTLATS
SSQLLFKAGKKTEPLKSPMSAAAYYDMTHPSRLGQRTPDQIDYVWSMLSVEKMKKWIEEH
SKNYEDYVLDMGEFAGSLKPAERKFFRTFMKNRAGGLEDGDRNSKSNFHIFKILRGFFKD
NIILQAEKINLSHEGYAKLTTELNQGIDDTVTPLCILEVVQSLVDCFNLDPNRVLHVIME
SFECRPQLHSRIFVPLICSYMSDSSTLCEVLGFKFTSFDPSSTPKSLFVITTLLLQHGVI
HLEGIYRWLTPEDSEIDESAAKELADAKEYARRMDIIAVPKEDEKIEELIEERAPYNRKF
VLCEALLSVGAWDQASSLLKRHPKHFVTSYRPISSSICKLVDYVTEPVYRTRCCISPELS
GKPVLPVGVWNFPKTAKEMKELRKTAFPMLLSLGPHLYNDPILLHKLIRLCNAALDDCGL
NSSKKPPQDPDSLYFDVCTLFDVVILPSLALMESNSSVEEEIWNVLKKLPYEHRHRRYAL
WRNDTFQSHSLLIRRKVDCVKRIKDIMERMSKDNVKPTGRVLGKLSHSCPGFLFDYILSQ
IQIYDNLIGPLVDSLKYLTNLSYDVLGYCVLEALSNPDKERTNPDGTTISMWLTALSAFC
GAIWGIEASEEMTKEHMEAMQGGELLRAEVAHFGQVRVTKKVAQRLKETLLEYNLAISLC
HVIAQQRCKSSQCLENRKTENNHLKLDGKLYDQCQDTLVQLGTFLALNMSDDDYYRRTLL
SEFRPPWSQLESWLSECHNHADVAFFLARPMFSHSINSKYDELRRAEENLLPAQNTQKSL
EDRVWEDLSPQFFATFWSLTVYDLSVPNAACEREVQRLKVAIQQTNENRDLSAIKQKNEL
DRCKALMDNLLEEEKKQKDHNERIMALLKQEKDSWFLCQVAKLSKTETITPFLQHCLFPR
CVFTATDALFCARFVQLMHNLKTPNFSTLNCYDLIFCDITWKGTMTSYSENEANRYGRFL
CAMLETVMHWHSSKKIFDEAIVLDSLPNFASANSLRKKTITLTLKSIVILFTSGTTIKIA
IALVVYLKSKDYVQIRNALIVLIRILPFFPVITPLVGFIDRNVEVVRREQRVTRQDLSAM
AISYGGQLKNKKTSIPEHEFHLATRKP
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacgaatcgcgtgtcaaccatttgaactgggaatctattaaatttcaagattat
tctgcagaagagtgtaaaaatcggtggttacatgttcaaactcatatgaggaattatcgg
atccttgccgaagtgttagaagatgctgaatcgtgggtagatggaccatgttataataac
ttaaacaaaagaagaaagaataaccagaagcatcctgatgatcagcctaaaaagccaaga
acttcctccatgttgccttccatggaacaaaaagatgctgttttggagaagccatctggt
ctggaagtgaaaaatgaaatggctccaaaaacactgatatcccctactttggcgacctcc
agtagtcaattgttattcaaagcaggaaagaagactgaaccacttaaatcaccaatgagt
gctgctgcttattacgatatgacgcatccgtccagattaggtcaacgtactcctgatcaa
atcgattatgtttggtcaatgttgtctgtggaaaagatgaagaagtggattgaagagcac
tcaaagaactatgaagattatgttttggatatgggcgaattcgccgggtcattgaagcca
gccgaacgtaaatttttccgcacatttatgaagaatcgagctggaggtctggaagatgga
gatagaaatagtaaatccaacttccacatctttaaaatccttagaggattttttaaagac
aacattattttacaagcagagaagattaatctttcacatgaaggctatgcaaaactaaca
actgaactcaatcaagggattgatgacaccgtcactccactctgcattttagaagttgta
cagtctttagttgattgcttcaacttggatccgaatcgggtgttacatgtgattatggaa
tcatttgaatgtcggccgcagcttcacagtcgtatttttgttccactgatttgctcgtac
atgtcagattcgtcgactttgtgtgaagtcttagggttcaagtttacttcattcgacccg
tcttctacaccaaaatctcttttcgtcatcactactcttttattgcagcatggagtcatt
catcttgaaggtatttatcgttggcttacgcctgaagacagcgaaattgacgaatccgcc
gctaaagaattagcagacgcaaaagagtatgctcgtagaatggatatcatcgctgttcca
aaagaagacgaaaaaattgaagaattgattgaagaaagggcaccttataatcggaaattt
gtactgtgtgaagctcttctttcagtgggagcttgggatcaagcctcttctcttcttaaa
cgtcatccaaagcatttcgtcacatcttatcgacccatctcgagcagtatctgcaaactg
gtcgactacgtaactgaaccggtgtatcgcactcgatgctgcatatctccagaactttct
ggcaaaccagttttacctgtcggtgtatggaacttccccaagacagccaaggaaatgaag
gagttgagaaaaactgctttccccatgctactctctttgggaccccatttgtataacgat
cctatcctcctgcacaagttaatccgtttgtgcaatgctgcgttagatgattgtggcttg
aacagttcaaagaaacctccgcaagacccggattcgctgtactttgacgtttgtacactg
tttgatgttgtaatattgccatcacttgccctcatggaatcgaatagcagtgtggaagaa
gaaatctggaatgttttgaagaaattgccttatgagcaccgtcatcgtcggtatgccctt
tggaggaacgacacgtttcagagccattctttgctcatccgccgcaaagtagactgcgtt
aaacgcatcaaggacatcatggagcgtatgagcaaggataacgtcaagcccacgggtcga
gtgcttggcaagcttagtcacagctgccctggctttctttttgactacattttgtcccaa
attcaaatctacgacaacctgattggccctcttgtggattcactcaagtacctcacaaac
ctttcgtatgatgttcttggttattgcgttttggaagcactttcgaacccagacaaggag
cgcaccaaccctgatggaactaccatctctatgtggctgacggccctttccgccttttgt
ggagccatttggggcatcgaagcgtccgaggaaatgacaaaggaacacatggaagcaatg
caaggcggtgagctattaagagctgaagttgctcattttggacaggttcgggttaccaag
aaagttgcccagcgtttaaaggaaacattgctcgaatacaatttggccatatccctctgt
catgttatcgcacagcaacgctgcaaatcgagccaatgccttgaaaatcgaaaaacagag
aataatcatctaaagttggatggtaaactatacgaccaatgtcaagatacgctcgttcag
cttggaacattcttggctttgaatatgagtgacgacgattattatagacgcacactcctg
agcgaattccgacctccatggtcacaattagaatcatggctctccgaatgccataaccat
gctgatgtcgcattttttctggcacgaccaatgttttctcattcgatcaattccaaatac
gatgaattgcggcgtgctgaagagaatttacttccggcccagaatactcaaaagtcttta
gaggaccgagtttgggaggatctatctcctcaattttttgccactttttggtcgctgacg
gtctacgatttgtcagtgccaaatgctgcctgcgaacgtgaagtgcaacgcctgaaggta
gccattcaacagacaaatgaaaatcgtgatctgtcagccattaaacagaagaacgagttg
gatcgctgtaaggctttgatggacaatcttctggaagaagaaaagaaacagaaagaccac
aatgaacgtatcatggcgctattaaaacaagaaaaagacagctggtttctctgtcaggtg
gctaaattatcaaaaacggagacgatcaccccgtttcttcaacactgtctttttcctcgc
tgcgttttcaccgcgacagatgccttattttgcgctcgctttgtacagcttatgcacaat
ttgaaaacaccaaacttttcaacgctaaattgctacgatctcatcttttgtgatataaca
tggaaaggcactatgacttcatattcggaaaacgaggcaaatcgttatggacgctttttg
tgtgccatgctcgaaactgtaatgcattggcactcaagcaaaaaaatatttgacgaagca
attgttctggattcgttaccaaatttcgcctcggcgaacagcctccggaaaaaaacgatc
acgttgactttgaaatctatcgtgatattgttcacaagtggcactacaattaagattgcc
atagcgctagttgtatatctgaaatcaaaagactatgtccagattcgaaatgcactgatc
gtcctaatacgcatcttgccattcttccccgttatcacgcctcttgtcgggttcattgat
cgaaatgtcgaagtagtacgccgtgagcaacgagtcacgcgacaggatttatcagcgatg
gctatttcatatggtggtcaattaaagaacaaaaaaacgtcaattccagaacatgaattc
catctggcgacgaggaaaccttag
DBGET
integrated database retrieval system
