Daphnia pulicaria: 124342222
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Entry
124342222 CDS
T08670
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dpz
Daphnia pulicaria
Pathway
dpz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124342222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124342222
03036 Chromosome and associated proteins [BR:
dpz03036
]
124342222
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124342222
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124342222
PBAF complex
124342222
GBAF(ncBAF) complex
124342222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_3
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
124342222
NCBI-ProteinID:
XP_046651142
LinkDB
All DBs
Position
6:23959686..23963596
Genome browser
AA seq
1102 aa
AA seq
DB search
MAFAPKKDGGPNLKFYESHETLLLFEGVKTWLLKNCKKYVQTDPPTAKSLSTSITQVIQF
QEDTYGKNVAKPPLTRIPTKCFLDFRPNGGICQILATVYKYRTDHGWRRMDFASPSRMER
HIEMMVAIEKALIQAKCLVQPNIYIMPDVDKGLVGKCCKLKEIVKRHQGLIAETEAEATH
LVHSAADPLEEEYARPLFRRDRNTLLHWYYFPDSYDKWDTIELPVDPPELSDYLESLNEP
HKTYRVAANWLLDLDQYNEWMNEEDYEVDASGKKKVHKLRLSVEDLMSGGDSKQKGKTPS
TLKRRRSPSPAGSGSTKAAATPTTAGGAGNKRKSVRPALGKKFKGGEEDSDDLTRDMDDP
PSDTNLREVEVPKTHPVPGGPPPTAIKKDADWMPTKGAALTDLDEEGEKLADITLVTPQD
DPHGQQVLLQQHDDNVTDQTHHIIIPSYAAWFDYNSIHSIERRALPEFFNGKNRSKTPEV
YLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDGDSRPM
PVGPPPTSHFHILSDTPSGLQPVNPPRTTQPSAAKTLIDMDKKTAARQSETAPVANNFGL
KLDQYSRKSSSVLKNKATREWTEQETLLLLEGLELYKDDWNKVCEHVGTRTQDECILHFL
RLPIEDPFFEDVELGGGGAVGPLAYQPIPFSQAGNPIMSTVAFLASVVDPRVAAAAAKAA
MEEFAKIKDEVPSALLETHLKNVENALSEGKSDASVAALAQSGIAGTVQDKEEAEREKEK
ADKLAEEKEALEKSEEKKEADKKVEEKKEAEKKEGEKEESTSAEGSKEPEKEKPATESEE
DKAEKMDVDNATAKDAKEDGEGAKELAAKESETKEPEIKEEKMDVDETKKDKEITEEDKE
KSAEAAAALAAANEKQKLVKDAQLQAAAAASLSAAAVKARHLAAAEERKIKSLVALLVET
QMKKLEIKLRHFEELEAMMDRERETLEYQRQALLQERQAFHLEQLRAAEARARQQAQVQL
QQQQMQQAQMQQQQQQQQQQHIQPIPMIPPVQLPIGPPPSVATAGYTGSSPLPPQIQPSP
QPHLPPPTTPVPSSEIPTTLSV
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcaccgaaaaaagacggaggaccaaatttaaaattctacgagtctcacgaa
actttgttgcttttcgaaggagtgaaaacatggcttttaaaaaattgcaaaaagtatgtt
caaacagaccctccaacagcaaaaagtctttcaacttccattactcaagtaatccagttc
caagaagacacttatggcaaaaatgtggctaaaccacctttgacaaggatccctacaaaa
tgtttcctagacttcaggcctaatggcggcatctgccagattttggctactgtttacaag
tatcgtactgaccatggatggaggcgcatggattttgcttctccttccagaatggaacgt
cacattgaaatgatggttgcgatagagaaagcactgattcaagccaaatgtcttgttcag
cctaatatttatatcatgccagatgttgataaaggacttgtcggtaagtgctgtaaactg
aaagaaattgtcaaaagacatcaagggttaattgcagagactgaagctgaagcaacacat
cttgttcattcggctgctgatccactcgaagaagagtacgcccgtccactgtttcgtcgc
gatcgcaacactttgcttcattggtattacttcccagactcgtacgacaagtgggatacg
atcgaattacctgtcgatcctccagagctctcagactatctcgaatctttgaatgaacct
cacaaaacatatcgagttgccgccaactggttgctggatttggatcaatacaacgagtgg
atgaatgaggaggattacgaagtcgatgctagtggaaagaagaaagtgcacaagcttcga
ttgtccgttgaggatttgatgagtggcggtgacagtaaacaaaaagggaaaactccttcc
actttgaaacggagaaggtctccttcaccggctggcagtggatcgaccaaagcagctgca
actcccacaactgctggtggtgctggaaacaagcgcaagagtgtccgtcctgccttgggt
aaaaaattcaaaggtggcgaagaagacagcgacgatcttacacgagacatggacgatcct
ccctcagacactaatctccgcgaagtcgaagtgccaaagactcatcccgttccgggcgga
cctcctccgacggctattaagaaagatgccgattggatgcccactaaaggagctgcattg
actgatttagatgaagaaggtgaaaagttggcagatatcacattagtcacaccacaagat
gatccgcacgggcagcaggtactgctacaacagcatgacgataatgtcaccgaccagact
caccacatcattattcccagctacgctgcctggtttgattacaattcgattcactcgatc
gaacgtcgcgccttgcccgaatttttcaatggcaaaaaccgttcaaagactccagaggtt
tatttggcgtatcgtaattttatgatcgacacctatcgcttgaatcctaccgaatatttg
accagcactgcgtgtcgacgcaatttggccggtgacgtttgcgccattatgcgcgttcac
gcctttttggagcagtggggactcgtcaattaccaggtggatggggattcacgcccgatg
cctgtcggtccaccacccacatcgcactttcacatcctctctgacacgccgtcaggtctg
cagcccgtcaatcctcctcggacaacgcagccatcagcggccaagactctgatcgacatg
gataaaaagacggcagctcgccaatccgaaacagctcccgtggccaataatttcggcctg
aaactggaccagtacagccgtaagagctcgtccgtgttgaagaacaaggcaaccagagag
tggacggaacaggagacgctgctcctgctcgagggcttggaactgtacaaggacgattgg
aacaaagtctgcgaacacgttggtactcgcacccaggatgaatgtattctccactttctt
cgccttcctatcgaggatccattttttgaagacgttgaattgggtggcggcggagctgtt
ggacctttggcctatcagcccattccgttcagccaggccggcaaccccatcatgtcgacg
gtggcgtttttggcctcggttgtggacccacgagttgctgccgctgctgccaaagctgcg
atggaagaattcgccaagatcaaggacgaagttccatcggccctgctggaaacgcacttg
aagaacgtcgaaaatgctctgagcgaaggcaaatcggacgcctcggtggccgctttggcg
caatctggaattgctggaacagttcaagacaaggaggaggccgagagggagaaggagaaa
gcggacaaattggccgaagagaaggaagccttggagaagagtgaagagaagaaggaggct
gataaaaaggtggaagaaaagaaagaggcagagaagaaggaaggagagaaagaggagtcg
actagcgctgaaggcagcaaggagccagagaaagaaaagccggccactgaaagtgaggag
gacaaagctgagaaaatggacgtggacaacgcgaccgccaaagatgccaaggaagacggt
gaaggagccaaagaattggctgcaaaagaatctgaaactaaggagcccgaaatcaaggag
gagaagatggacgttgacgaaaccaagaaagacaaggaaatcaccgaagaagacaaggag
aaatccgccgaggctgcagccgctctggccgccgccaatgagaaacaaaagttggtcaaa
gacgctcagttgcaagcggctgctgcggcttcgctttccgcggccgccgtcaaggcccgc
cacctggccgcggccgaggaacgcaaaatcaaatctctggttgcccttttggtcgagacg
caaatgaagaaattggaaatcaaattgaggcattttgaagaactcgaagccatgatggat
cgcgaaagagaaactttggaataccaacgacaggcattgctgcaagagcgtcaggctttc
cacttggagcagctgcgggcagccgaggcccgagctcgtcaacaagctcaagtgcaattg
cagcagcagcagatgcagcaggctcagatgcaacaacaacagcagcaacaacaacagcaa
cacattcaaccgatccccatgatcccgcccgtgcaattgcccatcggtccacctccttcg
gtagccactgccggctacacgggcagctcgccgcttcccccacaaatccaacccagtccg
caaccgcatttgccaccgccaacaacacctgtcccatcatccgaaatcccgacaactcta
tcagtttaa
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