Daphnia pulicaria: 124343127
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Entry
124343127 CDS
T08670
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124343127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124343127
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
124343127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_17
TPR_14
TPR_2
TPR_CcmH_CycH
TPR_19
TPR_1
TPR_11
TPR_8
TPR_16
TPR_12
TPR_9
TPR_7
ARM_TT21_C
TPR_COPA_B
ANAPC3
ChAPs
TPR_Slam
T7SS_EccA1_N
ARM_TT21_N
SPG48
WHD_ROQ1
Motif
Other DBs
NCBI-GeneID:
124343127
NCBI-ProteinID:
XP_046652223
LinkDB
All DBs
Position
6:complement(10068268..10072908)
Genome browser
AA seq
1351 aa
AA seq
DB search
MEYDVKKALKDAKEFIKNKEYTSALDTCKGILKHDKSNYLSWVLSAVSFQELGQSDKALT
AFVKATELQPGQLTAWQGLAAFLEQERNKIVITTDGGQQANDLSEKLCAVYRKLECLFES
DPIKQSNILKKQCELYTSLGQLENCTDRANLLLKKNDKEVIKFVAKVLSPVLPHLDHQLL
QILRDSLCEIINIDEELDQFFREQYLLILLQQKQYLKAANVASGILSSDPKNVRCLEAIC
FAFVEEEKIDISLDRIGEIIDALLSVNKNDHGMLAKARWLLLKEKSMEAKQLLELINTKE
ATRKSQLFLCDAYQQLHQWSKMENVCRAGLESATESDRLSWRLRLIKSLIEEDGVDRLNE
ASVILETVRDEAKSSATFRLLETLILLRTDHLEKCKNNLDLLEEQQPTDNMEQVLLMKAE
YLQKTGREIEAVELLDRACENHPQNVALLLNAAKMLWKRSDQREKSVTIMLNVIKINRDI
SEPYILLGTFYGEQRHNPSSMQRAVRCLEKAFQLDPYQTRTSEKLLELYRLIDDITSALK
LLDVVVRSNAKNRRWAWLQKGLLHLKMFQKVKQVSDKEKEAGLAITCLQNAMAIDSNDSS
GWEALGEAYIARGSYTAALKAFQRASELNPQSTYSSYQIASIKQIMGENAEAVTAFEELL
KQTPDYVPALKGLAETLLNQAAEYLTDGFTGRLVDCCSKALDLLVKASRLNSHLACVWSL
LGHVCLLLRSIPEDDFTLLDVPPVLLSDENSPVAKKQLMEMGPKFFLSALRLLPDSAALW
HNLALSYQSCWMVDETVAHKSSALAAIKKAITLEPKDSSHWDLLGQIAEQPAIRQHAFIR
ALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVSAWIGQGIIAEQLS
PAEAMDLFRHTSTIGSGSPGQCEGSPSYAQWVMNTLADPLAKQTAHYRYSIVQMHAVPAA
IDSLVKYVALYPDDSCALNLLGLLYERQGLFTKAEEAFLKGIQHLSLDDTTINRTRIDKM
KANLARLYTSMDRCDDATELYGSLQESELSSACGIALAHFKANRHAEAYVTYEAALHWLA
SDDEKRSHLLVAMAMAAFRRDFPDAEAAKLLLYESSQLQPPSVYGLLALGALGLLTDDET
LTTAAFQELLPYQTEPRYVADISRLSAYQQSVIGNELQGQREIVRNIHMLPNVAELWTLL
ASFKASLTVQASHPLSSDGLQVARWAEIAFDARRQSDSAVDHVFQPIDLSQVISLISLGY
LLAGQGSTSLITAQKAVHCNPHSAASWSVLLAAALPSWGGSAAGDEQLHRLSWLKKLIEH
LRRKCDVTAYSRLTPWLGHYERRLVSLLSKA
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgacgtaaagaaggctttaaaagacgcaaaagagtttattaaaaacaaggag
tacacttcagccttggacacctgtaagggcatattaaaacatgataagagcaactacctt
tcttgggttttgagtgctgtctcttttcaagaactcggccaaagtgataaagcattgaca
gcatttgtcaaagctacagaactccaaccgggccagctcactgcctggcaaggactagca
gctttcttagaacaagaaagaaacaaaatagtgattactactgacggtggtcaacaggca
aatgatctttcagaaaagctttgtgctgtttacagaaaacttgagtgcctttttgaaagt
gatcctataaaacaatcaaatattttgaagaaacagtgtgaactatacacttcattagga
caactggaaaactgcactgacagggcaaatctactcttgaaaaagaatgacaaggaagtt
atcaagtttgttgcaaaagtattgtctccagtattgcctcatctagatcatcaactcctt
caaattttgagagattccctctgtgaaataatcaacattgatgaagaattagatcagttc
ttcagagaacaatatcttttgattttgttgcagcagaagcaatatttgaaagcggccaat
gttgcgtccggaatactgagttcggaccccaaaaatgttcgatgtctggaggccatttgc
tttgcgtttgtcgaagaagagaaaattgacatttcgctggacagaattggcgaaatcatt
gatgcattgttgtcagtgaacaaaaatgatcatgggatgttggctaaagcgagatggtta
ctcttgaaagaaaaatcaatggaagccaaacagttattggagctgattaataccaaagaa
gcaacgcgaaaatcgcaacttttcctgtgtgacgcgtaccaacagttgcatcagtggagc
aaaatggaaaatgtttgtcgcgccggcttagaatccgcgaccgagtcagacagactttcc
tggagattaagattgattaagagtttgattgaagaggacggagttgatcgccttaatgaa
gcgtcagtcattttagagactgttcgagatgaagcaaaatcatccgcaacgttccgatta
ttggaaactttaattttgttgcgtaccgaccatctcgaaaagtgtaaaaataatctcgac
ctgttggaagaacaacaaccaacggacaatatggaacaagtgctactcatgaaagctgaa
tatttgcaaaagactggaagggaaattgaagccgttgagttgctagatcgtgcttgtgaa
aaccacccccagaatgtcgctttactcctaaacgcggccaaaatgttatggaagagatct
gatcaacgtgagaagagcgtcactattatgcttaatgtcatcaagatcaatcgagacatt
tctgaaccctacattttgttgggaaccttttacggcgagcagcggcacaacccttccagc
atgcagcgtgccgtgcgttgtctggagaaagccttccaactggatccgtatcaaactaga
acctctgagaagctgctggaactctaccgtttgattgatgacattacaagcgctcttaaa
cttttggatgttgtcgttcgctctaatgctaaaaatcgacgatgggcttggctgcaaaaa
ggtctcctccacttgaaaatgttccagaaagtgaaacaagtttcagataaagaaaaagaa
gccggattggctattacttgcttgcaaaacgcaatggctatcgattccaatgacagttcc
ggctgggaagctctgggtgaagcatatattgctcgaggatcttacactgcggcattgaaa
gcgttccagcgtgcgtctgaactaaatccccaatccacttattcatcgtaccaaatcgca
tctattaaacaaatcatgggagaaaatgccgaagccgtaaccgcattcgaagagctcctc
aagcaaaccccggattacgtgcctgctctgaaaggacttgcggaaacccttctaaaccag
gcagccgagtatttaaccgatggattcaccggcagattggtggattgctgctccaaagct
cttgatctgctcgtaaaggcgagtcgactcaattcacatttagcttgcgtctggtctcta
ttgggccacgtctgtttgctacttcgatctattccggaggacgattttacgctgctggac
gttccgccagtgctcctttcagacgaaaattcgcctgtcgctaaaaaacaattaatggag
atgggtccgaaattctttttgtctgctctgagattgttgcccgattcagctgcgctgtgg
cacaatttggctttgtcgtatcagtcttgctggatggttgacgaaaccgtagcacacaaa
tcctctgcgttggcggctataaaaaaagccattactttggagccaaaggattcgtcacac
tgggatctgcttggtcaaatcgctgaacaaccagccatccggcaacacgcatttatccga
gctctggaactaagtccaaatgcaccgagaactgctgccacctggactcatcttggagca
ttgtacatggaaaatggagatctccatcttgctcatgaatgcttcaagcaatctcaaaac
attgacccgttccatgtttccgcctggattggacagggaattattgccgaacaattgagc
ccagccgaagccatggatcttttccgccatacttcaaccatcggtagcggtagtcccggt
cagtgtgaaggaagtccgtcgtacgctcagtgggttatgaacaccttagccgaccccttg
gctaaacagacggcacactatcgctacagcattgtacagatgcacgctgtaccagcggcc
atagatagcctagtcaaatatgtagctctctatcctgatgatagctgcgcgctcaattta
cttggactcctttatgaacgccagggattgttcacgaaagccgaagaagcatttttgaaa
ggaatccaacatctaagtctggatgatactacaatcaataggacccgcatcgataagatg
aaagctaatctggccagactttacacgtccatggaccgttgtgacgacgccactgagctg
tacggatccctacaggaatcagagcttagttctgcctgtggaatcgctttggctcatttc
aaagccaacagacatgccgaggcttacgttacttacgaagcagccttgcattggttggcc
tcggatgacgagaaacgttctcacttgttagtggccatggctatggctgcattccggcgc
gatttccctgacgcagaagctgccaaattgcttctctacgaaagctcgcaattgcaacca
ccatcagtctacggtctgctggccctcggagcacttggactgctaacagacgacgagact
ttaacgacagccgcttttcaggaattgcttccctatcaaacagagccacgttacgttgca
gatattagtcgattatcggcctatcagcaatcggtcattggaaacgaactgcagggacag
cgtgagattgttcgcaatattcatatgctgcccaatgttgccgagctgtggacattgctg
gcctccttcaaagcttcacttacagttcaggcatctcatcccctatcatcggatggattg
caagtggctcgttgggcggagattgcattcgatgcgcgtcgccagagcgattcggccgtg
gaccatgtctttcaacccattgatttgtcacaagtcatttcactcatcagtttgggctac
ctgcttgcggggcaaggatctacaagtctcataacggcacagaaggctgtccactgcaac
ccacattcggccgcttcgtggtccgtcttactcgcagctgctctcccttcttggggaggg
tcggccgctggtgatgaacaacttcaccggttaagttggttaaagaaattaatcgaacat
ttgcgtcggaaatgcgatgtgaccgcttattctcggttaactccttggcttggccattac
gaacgacgattagtctcattattgagcaaagcttga
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