Daphnia pulicaria: 124343452
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Entry
124343452 CDS
T08670
Name
(RefSeq) endoribonuclease Dcr-1-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpz03036
]
124343452
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124343452
microRNA pathway
RISC loading complex
124343452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
DEAD
Dicer_PBD
ResIII
Phage_T7_tail
Motif
Other DBs
NCBI-GeneID:
124343452
NCBI-ProteinID:
XP_046652719
LinkDB
All DBs
Position
6:16086384..16094264
Genome browser
AA seq
2050 aa
AA seq
DB search
MLPQMMDLSSNDNFTPRDFEVELFESAKVKNTIACLKADLGKMFIAVMLIREKAFEVCNS
LLLPKGGFCSVYLTPTIKLALQRSAYLRHHTPLKVGIFHEKKGVLQWSSERWTEELGKSQ
VLVMTYSIFLEVIHKNFLKMNKLNLLILDDCHNVMNNEALKGVLTLYENAASSVHPRILG
LTASIVNNICKPMELSQLITILETKLKSVISTSNNVLSALQHSTRPKELICEISSKYEAT
ELQQEIMGRILLLNDYLRDHRYDPAEYYGEQDYLKEIPNPCHEPLDLLEEYIQIIQNFGP
WGADRAALVYLIHLEKLKTKAVYERHYLLLCLVFTVLLEIRSLCEEEFQKYSEYERIVKF
SHPKVLRLLDILRIYRPPIPSVLPTSAELVEVSDSLVSSEGQTVQTPKLATETSQTAELI
ENGPAILRQSTTQPGHTSRRRRPDFSNRHHRNREDAYQLCGMIFTERRTTAKLLYHLLKD
ASRCDPQLAYLSPLYTVDRMEGVSVKEMENEERKQEDVMKRFRSRDCNILVATSVLEDGI
DVPACHLVIRYDLPQSYRAYVHSKARARAKKAHYILMVENERMDEFLVDLSHFHATEQIL
LSKSGYHNSVAEFFNHNEDMLNCIQAPYPSDETSNSYASLQNAISIINRYCAKLPSDCFT
RLTPVWRIRTIKRELIEPSVLDKWIGLFKNSGATENVFLDVAYICSLQLPINSPLRKTVL
SQPMPSKVTAKRSAALEACRLLHQKKELDDHFYPTGKENLRLEEEEDYNADLEEENVPEN
LPRPGTTKRRQYYYKQVADPFINGIPRPDQPCYLYAITMVLSEPIPEEQNTRGRKIYKPE
TSIQSLGILNSKPLSQICPFPIFTRSGEVEVEIVKISDAIRVTEGQLKQISDFQRYIFRN
VLSLEKDPMLLDVYNADCSYLIVPLRRSSFSEHSKLSLDFVFIDLISSVRDSKPQLIAEE
VRSGYVFDPRLFSDAVVMKWYRDQEHPQCFYVAEIFYELNPQSKFPDNNYPTFEKYYRHK
YGIQIQNLKQPLLDVDHTSARLNFLTPRYVNRKGVMLPTSSEHTKKTQRESLQQKQILVP
ELCSIHPFSASLWRQAVCLPCILYRLNGLLLAEQLRCKVATEISLGRSQLEPGFCWPALR
FDWKCKSSDPALPPLQRESIAKKVEDTKLKDCPEENDASKSSSKVPKREIKEGKKSAGAS
LLDIGVWNPDAINGSNNQSDNRNTETADEDYDYNDLQAVALLTNDSGLDFDWSKPVVDIT
GHDGSLPAFGVPTPQSYLEPWGESKTKQFSQYRPQSPSELISNFSDGSYNSGQSANDSDT
DDVSEEDESGCKVKEFGPKFVCRGDTAEAIEEPINLKARKFKSPEEEELEEELTEDDEPY
ENIEDLLSMKMQWNVDIPNRDLEVKCENLLRLHKALIVDQSVVPMDKDIPIMTPFTHRIT
ENPENSTLVPEECNKPLDPSGPAAKPNRRLASESSHMLELTRLLLEEYTSECSNDSEPSP
DPPIRETPILPKKDDTGLVITELTVPGLDFPFSFDEQQGLESHPGPSPSVILQAFTMSSA
NDGINLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQVSNLHLYQLGKKKLFG
GCMVATKFNPHENWLPPGYVIPDALEEALISSGIPLNYWNVVDLQGMEHMSSEQVKALVQ
EKSEQIMLRFGGKIPSVEEVAMDGNIFHAQDLPRFVPYNLLTQHSIPDKSIADCVEALIG
AYLRACGPRGALLFMSWLGLKVLPVINEGSYGYWTPPISPLVDQPLDIHVELDRMLAGFE
SFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLPRH
PPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINEEY
YMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEIDEFSKNVPKSPI
RELLELETDRVKFGKAERLPDGRLRVTVDVIGKGTFKGIGRNYRIAKCTAAKYALRTLEK
RKMLTKRGEQ
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcaaatgatggatttatcatcaaatgataattttactccaagagattttgag
gttgaactttttgaatctgcaaaagttaaaaatactattgcatgtttaaaagctgacttg
ggtaagatgttcattgctgtaatgttaattcgagaaaaagcttttgaagtgtgcaattct
ctgctcttacccaagggaggtttttgctcagtttaccttaccccaacaatcaaattggca
cttcagcgttcagcttacttgcgacatcacactccattgaaagtaggaatttttcatgag
aaaaaaggtgtattgcagtggagttctgaaagatggacagaggagttggggaaaagtcag
gtgcttgtcatgacatattccatatttctagaagtcatccacaaaaactttctcaaaatg
aacaagcttaatttgttgatattggatgactgccataatgttatgaacaatgaagcttta
aaaggagttttaactctctatgaaaatgcagcaagtagtgtacatccaagaatccttgga
ttaactgcatctattgtaaataacatatgcaagccgatggaactgtctcagttgataact
attctggaaacaaaattaaaatcggttatttcgacttccaacaacgttttgtcagccttg
cagcattcaactcgacccaaagaattgatatgtgaaatatcgtccaagtatgaagccaca
gagctgcagcaagaaataatgggtcgtattcttttattgaatgattatctgcgagatcat
cgatatgatcccgctgagtactatggggaacaagattatctaaaagagattcctaatcca
tgtcatgaacctcttgatctacttgaagaatacatccaaatcattcaaaattttggtcct
tggggagcagaccgtgctgctttggtatacctcattcatttagaaaaattgaaaacgaaa
gcagtttatgaaagacactatcttctattatgtcttgtcttcactgttttacttgaaata
agatcattgtgcgaagaagagtttcagaaatactctgaatatgaacgtatcgtgaagttt
agccatcccaaggttcttcgcctgttggacattcttcggatctaccgaccgccgatacct
tccgtgctgcccacaagtgctgaattagtagaagtaagcgattctttagtttcgtccgaa
gggcaaactgttcagaccccaaagttggcaaccgaaacgtcgcaaaccgcagaattaatt
gaaaacggtccagcgattttgcgtcaatcgacaactcaaccaggacacactagtcgacgg
cggcgtcctgatttctcaaatcgccatcaccgaaatcgagaagatgcttaccagctctgt
gggatgattttcactgaaagacgtactacagcaaaattactctaccatcttttaaaggat
gcaagtcgttgtgatccacaactagcttatctaagcccgttgtatacggttgaccgaatg
gaaggcgtgagtgtcaaagaaatggagaatgaagaaagaaagcaagaagacgtcatgaaa
cgatttcgtagtcgtgattgtaacattcttgtagccactagcgtattagaggatggaatt
gacgttccggcatgtcatctggttattcgttacgatttaccacaatcctaccgggcttac
gttcactcaaaagctcgagctcgcgctaaaaaagcacattacatcctcatggtcgaaaat
gagcgcatggatgagtttttagtggatttatctcactttcatgcaacagaacaaattctg
ttaagtaaaagcgggtatcacaattcggttgctgagtttttcaaccacaacgaagatatg
cttaattgcattcaggctccctacccttctgatgaaacttctaattcgtatgcatctttg
caaaacgcgatttctataattaacagatattgcgcaaagttgcctagcgattgtttcaca
cgcttaacccctgtgtggaggatacgtaccataaaacgagaattaattgaaccatctgtt
ttggataaatggattggactatttaaaaatagtggtgcaacagaaaacgttttcttggac
gtagcatacatatgctcgttgcagttaccaattaattctcctctgcgaaagactgtatta
agtcaacctatgccatcaaaagtaacggccaaacgatctgcggcactagaagcatgtcgg
ttattgcaccaaaagaaagagttggacgatcatttctatccaacggggaaggaaaacctt
cggcttgaagaggaagaggattacaatgccgatttggaagaagaaaatgtaccagaaaac
ttaccacgcccaggcactaccaagcgaagacagtactattataaacaagtagctgatccg
tttattaacggtattccacgtcctgatcagccttgctatttgtacgcgatcacaatggta
ttgagtgagcctatacctgaggagcaaaacacgcgtggaagaaaaatttacaaacccgag
acttctattcaaagtctgggaattttaaacagcaaacctctttctcaaatctgtccgttc
cctattttcactcgctcaggcgaggtggaagtggaaattgtaaaaatttctgatgccatc
cgagtgaccgaagggcagttgaaacaaatttctgattttcaacgctacatttttcgaaac
gtactttccttggaaaaggatcctatgttgttagatgtatacaacgccgactgttcttat
ctaatcgttcctttaagacggagttcattctcggaacactctaaattaagcttggatttt
gtattcatcgatttaatttcgtccgttcgagattcgaagccccaattgatagccgaagaa
gtcagatctggatatgtctttgaccctcgattgttctctgatgctgtcgtaatgaaatgg
tatcgtgatcaagaacacccacaatgtttctatgtggccgagatattctacgaacttaac
cctcaatctaagttccctgataacaactatccaacatttgaaaaatactatcgccacaag
tatggaatccaaattcagaatctgaagcagccactgttagacgtcgatcatacctcagcc
agactcaattttttaacgccaaggtacgtcaaccgcaaaggagtaatgttaccaaccagt
tcggaacatacaaagaaaacacagcgagaaagtctgcaacaaaaacaaatacttgttccg
gaattgtgtagcattcatcctttttcggcctcactatggagacaagcagtgtgtcttcct
tgcattctttacagactgaatggacttcttttagcagaacaactccgttgtaaagtagca
accgagatttctttggggaggagtcagctggaacctggtttttgctggcccgctttacga
tttgattggaaatgcaagtcttcagatcctgcgttaccacctttacagagagaaagtatt
gctaaaaaagtggaagacacgaaactgaaagattgccctgaagaaaacgatgcgagtaaa
tcctcctcaaaagttcccaaaagggaaatcaaagaagggaaaaaaagtgcaggagcttct
ttgttggatataggcgtgtggaacccagatgcaatcaacggcagtaataatcagagcgat
aacagaaacacagaaacagctgatgaagactacgactacaacgatctacaagcggtagcc
ctgcttaccaatgatagcggactggattttgattggtccaaaccagtggtggatattact
gggcatgatggatctctccctgcatttggtgtccccacaccgcaaagctatcttgaacct
tggggcgagtccaaaacgaagcagttctctcagtaccgccctcagtctccttctgaatta
attagcaatttttcagatggctcatacaatagcggtcaaagcgcgaacgacagtgatacg
gacgatgtttccgaggaagacgaaagcggttgtaaagtaaaagagtttggaccaaagttt
gtctgcagaggcgatactgctgaagcaattgaagagcccattaaccttaaagcaagaaaa
ttcaaaagtcccgaggaagaagaattagaagaggagctgactgaagacgatgaaccttat
gaaaacattgaagatcttcttagtatgaaaatgcaatggaacgttgatattcccaatagg
gatttggaagtcaaatgtgaaaatttactaagactgcacaaagcactgattgttgatcaa
tcagttgtgcccatggataaagacatccctattatgacgcctttcactcatcgaatcacg
gaaaatccagagaatagcacactagttccggaggagtgcaataagccattggatccctct
ggcccagcagccaaaccaaatcgtagactagcgtccgaaagttcacatatgttggaactc
actcgtctgttactcgaagaatataccagtgaatgttctaatgacagtgagccttctcct
gatccaccaattcgagaaactccaatccttcccaaaaaggacgacactggattagtaatc
acagaactcaccgttcctggtttagatttccccttcagttttgacgagcagcaaggtttg
gaaagccatccgggaccatctccgagtgtgattctgcaagcatttactatgtccagtgca
aatgacggaattaatttagaacgactagaaactataggcgactcgtttttgaaatatgcc
atcaccacttacttgtactgcaaatacagcagcattcatgagggcgagctcagccatttg
cgctcgcgacaagtatccaatctgcacctttatcagttaggaaaaaaaaaactctttggt
ggttgtatggttgcaacgaaattcaatccgcatgaaaattggttaccaccgggttatgtc
atccccgatgccttagaagaagcacttatttcctccggaattccgttaaactactggaat
gtcgttgacttgcagggaatggaacacatgtcaagcgaacaggtaaaggccttagttcaa
gagaaatcggaacagataatgttgcgtttcggaggcaagattccatcagtcgaagaagtg
gctatggatggaaacatatttcatgcccaagatttacctcgcttcgtcccttacaatcta
ctaacgcagcacagtatccccgataagagtattgccgattgtgtagaggctcttattgga
gcctatctcagagcttgtggtccgcggggggcactgcttttcatgtcctggcttggactc
aaagtacttcctgtcatcaacgaaggttcttacggatattggactccgccaatctcacct
ttagttgaccaacccttggatatacatgtagaactggatcgcatgttggcaggatttgag
tcttttgaagagaagatctgttacaaatttaatgaccgttcttacttactccaggctttt
agccacgcctcttactatctcaaccgactgaccgattgctatcaaaggcttgaattcctc
ggtgatgccgtcttagattacctcataacgcgatatttatatgaaaatttgccgcgtcac
ccacctggggctctgactgatttgcgttcggcattggtgaacaatacgacttttgccgtt
ttggcagaacgttatgaattccatcgctatttcaaacatttatctccttctttgaatcaa
attatggacaagttcatcaaagctcaagaagaaaacggacattccatcaatgaagagtat
tacatgatagaagctgaggatgtagaagtacctaaagttcttggcgatgtatttgagtcg
gttgctggtgccatttatcttgattcccacatgtctttgaatgcagtttggagagtgtat
tacaacatgatgaaaaaagaaatcgacgagtttagtaaaaatgttccgaagtctcctata
agagaactgctggaattggaaaccgaccgagtaaagtttgggaaagctgaacgtctacca
gatggccgtctaagggttactgttgacgtcatcggcaaaggaactttcaaaggcatcggg
cggaattaccgcatagcaaagtgtaccgcggccaaatatgctctacgaactctggaaaag
cgtaaaatgttaactaagcgtggagagcagtaa
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