Daphnia pulicaria: 124343578
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Entry
124343578 CDS
T08670
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpz03016
]
124343578
03036 Chromosome and associated proteins [BR:
dpz03036
]
124343578
Enzymes [BR:
dpz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
124343578
Transfer RNA biogenesis [BR:
dpz03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
124343578
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124343578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
DUF1877
RHH_4
Motif
Other DBs
NCBI-GeneID:
124343578
NCBI-ProteinID:
XP_046652902
LinkDB
All DBs
Position
6:complement(2086282..2091405)
Genome browser
AA seq
1442 aa
AA seq
DB search
MGEEISAVLNFISERSVEEAIEKVVDEIKLSTNLDHSWKVLHHLLKSAEKDVKFNAKDIV
NVCLQHLKKQDTCIMQARFICKILIVLVEKADKAEFEEELEIFLEDLQFNIIRQSNAHQL
HDDCVIDYQTATTILSLTFPSFVKIGLPKNQAKLLEVIPAMIQSKNENSIVESLAFMLPA
VIHHDSLFETVCKSIQKLFEAEEDLDKISNHPGLTALCSIADILFSKTFKHNVYQETWFH
RGIQRGLSDPAALNRKRAQYLLKRYVDATEANVSLFNDFFLVMETLEEKQMHIINPVLPR
MKSLEERILEKKQSDSSWIQCIYKRLLSHENIQVIKWGLHNLCQVKVQFWPDIGHSDWLY
DVLLLGLNNMVFYVRENANQLPQLGTDLGQLLQNCATLETEREEFFVRLLRGISLVPWNA
VGLFHLVHAFASLPPSEILDGEALQIVLEFLRSGLHTHHPLLRGAIQGLMLEFVLNMTVI
SQANLLWIALILSTLNPQECFIRTTPLHATLRAWIRDRFTPTQHGELLSQLLTTHFEPST
DVRTAYSVDVTAVARFAVLLLDAETTDTEGMRQLQMCVQPLDNCHTRLYADPRLLNQRMK
LMMTLLDEVRSTNSTAVVRLVFPLTESVVHYCLDQIESLSNYTSVCESLAVLESIAKTED
LLGVIAASRRKLELLARKLLNGCSALDKFKCISLLFLIARFDQHIVDEFIREMISLKLHC
KAPLRDDSALEHVTWGAFMSHYFSQLWTLLHQRLPYIEPKLNSEDLVNEAVCAMDIAGVE
AIKSIFGCLAHLLPDVCDSNPALCRTSLQASWTSCFEYRRSDHFWDLMKGFAIAAFNHSL
MEQPEIRPQLFGFLSELKSQGENILQLFNFAAERVIDIWTNQAFPSNDSYAIQFILDLTN
FGLIHRRDEMIFFETLAFVRSLGERCPANINLQSEEMADGKVRLQGLRFLLSLNKSNEQH
ITMVESLVEAYLKEDRVMSASKTRYFSSSHGHRVKHRLWVAMIMLQDLLPLGHRQTTEIM
EAALSGLIDDNPQPSVRFLQEWSVTRAIFLSAELEAVFWKTMDDAVQQRAGSMVSFLSII
GHVTRCLARSERLENFASNGLPRVIPWAMAQHFTPRLYATVILDVIWSICESSKIQSLLG
EYSTTRRILRDAPDMPNTQRNLEKLCQDFYFSVFHPMDNFTLETLCYHLPRLSHLVAEEW
LPVEWFNDIPSWIPRRDMDGQLADCNPAEWVARAAGGAPAFTQDDSVSPAMAVRNVQKKI
TPWKQMLPDVNSLVVSAGRKKTTTNDLIVIASLVDRVPNLGGLCRTCEVLGVRDFVLSSL
RVTEEKDFVSLSVSAEKWINVLEIKPFQLVEYVKQLKLEGYTVVGAEQTASSQPLNHFTF
PKKSALILGHEKEGIPVELIQHLDVCVEVPQEGIIRSMNVHVTGAIFIWEYARQQMGLSH
VR
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggaaatttctgcagttctaaatttcatcagtgaaaggagtgtggaagaggct
atcgaaaaagttgtggacgagatcaaattaagtaccaatcttgatcacagttggaaggtt
cttcatcatctattgaaaagtgcagaaaaggatgtcaagtttaatgccaaagatattgta
aatgtttgtttacaacacttaaaaaaacaggacacctgtatcatgcaagcacgattcatc
tgcaagattcttatagttttagttgaaaaggcagacaaagcagaatttgaagaagaactt
gaaatttttttggaggacttgcaattcaacattattcgtcagtccaatgctcatcagctg
catgatgattgtgtcatagactatcagactgcaaccactattttatccttgacttttcca
tcatttgtaaaaattggtttgccaaagaatcaagcaaagttattggaagttattccagcg
atgattcaatccaaaaatgaaaattctatcgttgaatcactagccttcatgctgcctgct
gtcatccatcacgactcactattcgaaactgtgtgcaagtctattcaaaaactttttgaa
gcagaagaagatttggataaaatttctaaccatcctggccttactgcactttgtagcatt
gcagatatcctattttctaaaacttttaaacacaacgtctatcaagaaacttggtttcac
cgtggaatccagcgaggattgtctgacccagccgctttgaaccgcaagcgtgcacaatac
ctgttgaagcgctacgtggacgcaactgaagcgaatgtttcgctcttcaacgatttcttt
ttggttatggagactttagaagagaaacagatgcatattattaaccctgttcttccgaga
atgaaatccctggaagaacgcatcctagagaagaaacaatccgactcctcctggatacag
tgcatttacaagcggctcttatcgcatgaaaatattcaagtaatcaagtggggtttgcat
aatctctgccaagtaaaagttcaattttggccagatattggccacagtgattggctatat
gatgttctactgctgggccttaataacatggtattttacgtccgagaaaatgccaatcag
cttccccaactaggtaccgatctcggtcaactattgcaaaattgtgcaactttggaaacg
gaacgcgaagaatttttcgtccgtctattgcggggcatttccctggttccctggaacgcg
gtgggtttattccacttggttcacgcgtttgcctctttacctccaagcgaaattcttgat
ggcgaagctcttcaaatagttttagagttcctacgtagtgggttacacacgcatcatcca
ctacttcgcggagccattcaaggactgatgctggaatttgtattgaacatgactgtcata
tcgcaagcaaatctcttgtggatagcgctcattttatcaacactaaatcctcaagaatgc
ttcatccgcactacacctctccacgctactctcagggcatggatacgcgatcgctttaca
cccactcagcatggagagttgctcagtcagcttttgactacgcattttgaaccttcgact
gatgttcgcacggcttattctgtggatgtcactgccgtggctagattcgccgtattgttg
ctggatgctgaaacaaccgacactgaaggtatgcggcaactgcaaatgtgtgtgcaacct
ctggacaactgccacactcgactgtacgctgatccccgtttgctgaatcaacggatgaaa
ttgatgatgacattgttggatgaggttcgctcaacaaattccactgccgttgtccgcttg
gtatttccgctcaccgaatcggttgtacattattgcctggatcaaatcgaatcgttatcc
aattacactagcgtgtgtgaaagtcttgccgtgttggaatcgattgcgaagacggaagat
ctgctcggagtgatagccgcatcaagaaggaaattggaactattggcgcgcaaattactg
aatggatgttctgcccttgacaaatttaaatgcatttctctcttatttcttattgcccga
ttcgaccaacatatagtggacgaattcatccgtgaaatgatttctctcaaactgcattgc
aaagctcctctacgtgatgattctgctttggaacatgttacctggggagcttttatgtct
cactacttttctcagttatggacattacttcatcaacgactgccttacatagaacctaaa
ttaaattcagaagacttggtaaatgaagctgtttgtgccatggacattgccggtgttgaa
gccatcaagtcgatatttggctgtttggctcatcttctaccagatgtttgtgactctaat
cctgccctgtgtcgcacaagtctccaagcaagttggacatcgtgcttcgagtatcgtcgc
tcggaccatttttgggacctaatgaaagggtttgccatagcggcctttaatcattcacta
atggagcaacccgaaatccgcccgcaactttttggattcttgtctgaattgaaaagccaa
ggtgaaaacatattgcagcttttcaatttcgcggccgaacgcgtcattgatatttggacc
aatcaggccttcccttcaaacgattcctacgccattcaatttatcctcgatctgactaat
tttggactgattcatcgacgggatgaaatgatattttttgaaactcttgcgtttgtccgc
tcgctaggagaacgttgcccagccaacattaatcttcagagtgaagaaatggccgatgga
aaagttcgcttacaaggattgcgtttcttgctctcgctaaacaaatcaaacgaacaacac
ataaccatggttgaaagtctagtggaagcctatctaaaagaagatcgggtcatgtcagcg
agcaagactcgttatttctccagctcacatggacatcgtgtgaagcatcgcctttgggta
gcaatgatcatgctgcaggacctgcttcctcttggccatagacagacgactgagatcatg
gaagcagctctttcaggactgattgacgacaatcctcaacctagcgttcgctttttacaa
gaatggagtgtcactcgtgccattttcctctcggcagaactggaggcggttttctggaaa
acgatggatgatgcggtgcaacagagagctggttctatggtttctttcttgtccataatt
ggacatgttacccgatgccttgctcggtccgagcgattggaaaactttgcttctaatggt
cttccgcgcgttattccttgggctatggcgcaacattttacccctcgcttgtacgccacc
gtcattttggacgtgatctggagtatttgcgaatcatcgaaaattcaatcgttgcttgga
gaatattcgacaactcgacgcattttgcgcgatgcacccgacatgccaaatacccaacga
aacttggagaaattgtgtcaggatttctactttagtgttttccacccaatggacaatttt
actctggagacattgtgttatcacttacctcgactttcgcatttagtcgcagaagaatgg
ttacctgttgaatggttcaacgatattccttcttggattcctcgacgcgatatggatgga
caacttgctgattgcaatccagctgagtgggtggctagagcagctggaggtgcgccggcg
tttacccaagacgattctgttagtccagccatggctgtgaggaacgttcagaaaaagatc
acgccatggaagcagatgttgccggatgtcaacagtttggttgtgtcagccggtcgaaaa
aagacgaccacaaatgatctgattgtgattgcgtcactggttgaccgagtcccgaatttg
ggtggattgtgtcgcacttgcgaagtactcggcgtcagagattttgtcctgtcctcactg
cgtgtcacggaagaaaaggatttcgtcagtctcagtgtttcggccgaaaagtggatcaac
gtgctcgaaataaaacctttccagctagtggagtacgttaagcaactaaagctggaggga
tatactgttgtcggggcggaacaaacggcgagcagtcaacctctaaaccatttcactttt
ccgaaaaaatctgcacttattttgggtcacgagaaagaaggcattccagtagaactgatt
caacatcttgacgtctgtgttgaagtaccgcaagagggaatcatcagatcaatgaacgtc
cacgtcactggagccatctttatctgggaatatgcccgtcaacaaatgggattgtcccac
gtgcgctga
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