Daphnia pulicaria: 124343971
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Entry
124343971 CDS
T08670
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog isoform X1
KO
K15176
RNA polymerase-associated protein CTR9
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124343971
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
124343971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_14
TPR_19
TPR_12
TPR_16
TPR_CcmH_CycH
TPR_17
TPR_11
TPR_10
TPR_6
TPR_7
TPR_9
ARM_TT21_4th
ANAPC3
PknG_TPR
DUF4810
Motif
Other DBs
NCBI-GeneID:
124343971
NCBI-ProteinID:
XP_046653318
LinkDB
All DBs
Position
6:4539854..4544831
Genome browser
AA seq
1199 aa
AA seq
DB search
MGSVEIPLRDTDEVIELFFDQLPDGDEVIQILKQEHAQIHIWVTLAVEYNNQNKIADFVK
VLEASRTESNMNYKDSEKDQMKALDTLAAHYVQQANREKNKDKKRELFTKATHLYTTADK
IIMYDQNHLLGRAYLCLLEGDKMDQADAQFNFVLNQSPDNIPSLLGKACISFNKKDYKAA
LAYYKKALRTNATCPAGVRLGMGHCFLKLGNADKARLAFERALDLDPKCVGALVGMAILE
LNLQESDSIRNGVQLLSRAYAVDSSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTENE
AMRAESCYQMARAFHVQGDYDQAFQYYYQATQFASTNFILPHFGLGQMYIYRGDTENAAQ
CFERVLKAQPGNYETMKILGSLYAASSSQSKRDIAKTHLKKVTEQFPDDVEAWIELAQIL
EQSDLQGSLSAYSTAMKILKEKVQADIPPEILNNVGALYYRLGNLEESRKYFEQSIERAK
SDAEQETPAENSEQEPQVENAICVTTNYNLGRIYEGLFLCDKAEKNYKDTLKEHPNYVDC
YLRLGCMARDRGQIYEASDWFKEALQINNEHPDAWSLIGNLHLAKMEWGPGQKKFERILK
QPATATDSYSLIALGNVWLQTLHVPTRDKEKEKRHQDRALTLYKTVLKNDHRNIWAANGI
GCVLAHKGCIPEARDIFASVREATADFSDVWLNIAHIYVEQKQYVSAIQMYENCIRKFFR
HPHVEILQYLSRAHFRAGKLREAKLSLLKAQHVAPHDTVLLFNTALVLQRLATQILKDEK
SDLQTVLQAVSELQLSHKFFQWLSVNGDRMRYDLAFAAAEARHCGDLLSQAQYHVARARS
LAEEEKRMRKKQEEEREAFRTKQREEQHRLEESRRQEQEKLLKLREEFIEKTKKATQFNE
MPSEKAEKGKKSRKKKDDEDGFVTDGSDRIQSGDEGAGPPSKKRKAERKPRQTETKSRKK
GKSGEERGRTKEKKGRSEGRGAKKGSGKKSSNDVDDGLSSKQKSKVVSKAIISSSDDDSS
EEGGKLRIASGGEESGGEGAGTSRRRRIASGSEKSFSGRSVSRSPAKSRSPSGSRSGSGS
RSGSGSRSRSRSSGRSNSRSKSRSKSGSKSRSRSNSRSKSRSKSRSKSRSKSRSKSRSKS
RSKSRSKSRSVSRSSRSSRSSRSSRSRSKSKSGSRSRSTSRSKSGSRSKTPKSGSDDSD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgtcgaaatccctcttcgggataccgacgaggtgattgagctgttctttgat
caacttcctgatggggatgaagtcatccagattctcaagcaagaacatgcccaaattcat
atttgggttactctggcggtggagtataacaaccaaaacaagattgcagattttgttaag
gtgttagaggcatcacgtacagagtcaaatatgaactataaagattcagaaaaggatcaa
atgaaggctcttgatactttagctgctcactatgtccaacaagcaaatcgagaaaaaaat
aaggacaaaaagcgtgaacttttcactaaagcaacacacctctacacaactgctgacaaa
atcatcatgtatgatcagaaccatctgctaggccgtgcctatctctgtttgttggagggt
gataaaatggatcaagctgatgctcagttcaactttgtgttgaaccagtctccagataac
attccttctcttctgggaaaagcctgcatctctttcaacaaaaaagattacaaagctgca
ttggcctactataaaaaagctttaagaactaatgcaacctgtccagctggtgtgcgattg
ggtatgggtcattgtttcctcaaactgggcaatgctgacaaagcaaggttggcgtttgaa
agagctcttgatttggacccaaaatgtgtgggagctttggttggaatggctattctggag
ttgaacttgcaagaatcagattcaattcgcaacggcgttcagctcttatctcgagcttac
gcagtagactcaagtaatcctatggttcttaaccatcttgcaaaccatttcttcttcaaa
aaggattactctaaagttcagcatttggcgctccatgcttttcacaacactgaaaatgag
gcaatgcgagctgaatcgtgctaccaaatggctagagctttccatgttcaaggcgattac
gatcaagcgtttcaatattattatcaggctactcaatttgcatccacaaatttcatcttg
ccacactttggtctgggccagatgtatatttaccgtggagatacggaaaacgccgcgcaa
tgtttcgagcgagtgcttaaagctcagccgggtaattacgaaacaatgaaaattcttggc
tcattgtacgcagcttctagtagtcagtcgaagagggatattgccaagactcatctcaag
aaggttacggagcaatttcccgatgacgttgaagcatggattgagcttgcacagatttta
gagcaatctgacttgcagggctccctgtcagcttattccactgcaatgaaaattcttaaa
gaaaaagtccaggcagatattcctcctgagattcttaacaatgtcggagctttatattat
agattgggaaacttggaggagtcaagaaaatattttgagcagtcaattgagcgtgccaaa
tcggatgctgagcaagagacccccgcggagaactctgagcaggaaccacaggtggaaaat
gctatttgcgttacgacaaactataacttgggtcgaatttatgaggggctgttcttgtgt
gacaaagcagagaaaaactacaaggatacccttaaagaacatcctaactatgtggactgt
tatctgaggcttggttgcatggcacgagaccgcggtcaaatttatgaagcgtcagattgg
tttaaggaagcccttcagatcaataacgagcatccagatgcctggtctcttattggcaac
cttcatctcgctaaaatggaatggggacctggccaaaagaaattcgagcgcatccttaaa
caacctgctactgcaaccgattcatactcgttgattgcgcttggtaacgtctggctccaa
actctgcacgtacctacaagagacaaggaaaaagagaaacgacatcaagaccgcgcactt
acactgtacaagacagttctgaagaatgaccatcgtaatatttgggctgcgaatggtatc
ggttgtgtgctagctcacaaaggctgtattcctgaagcccgtgatatctttgcatcagtt
cgcgaagctactgccgatttttctgatgtgtggttgaacatcgctcatatctatgtcgag
caaaagcagtatgtttcggccattcagatgtacgaaaactgcatccgcaaatttttccga
catccgcatgttgaaattcttcagtacttgtcacgcgcacactttcgtgccggtaaactc
cgcgaagcaaaactatccctacttaaagcccagcacgtcgctccacacgatacggttctc
ctgtttaacacggctctcgtgctgcaacgactggcaacccaaattctcaaggatgagaag
tcggatctgcaaacggtgttacaggctgtcagtgaactccagctatcgcacaaattcttc
cagtggctttctgtcaatggcgatcgcatgcgctatgatttggcttttgctgctgctgaa
gcgagacattgtggagatcttctctctcaggctcaatatcatgtggcgcgcgctcgcagt
cttgcagaggaagagaagcgcatgaggaagaaacaggaagaagagagagaggcgttccgt
acgaagcagcgcgaggaacagcatagacttgaagaaagtcgtagacaagagcaagagaaa
ctactcaagttgcgcgaagagttcattgaaaaaacgaagaaagcgactcaatttaacgag
atgccatcagaaaaagccgaaaagggcaagaagagtcgcaagaagaaggatgacgaagat
ggattcgttacggacggtagtgatcgcattcaaagtggcgatgagggtgctggtccgcca
tcaaagaaacgtaaggcagaacggaaaccgcgccagactgagacaaagtcacggaagaaa
ggaaaaagcggcgaagaacggggacgaacgaaagagaagaaaggtcgaagtgaaggcaga
ggagccaagaagggaagtgggaaaaagtcatctaacgatgtcgacgatgggcttagttca
aagcagaaaagcaaagttgtatctaaagccattatttcctcctcggatgatgattcgtcg
gaagaaggtggtaaactgcgcatcgctagcggtggagaggaaagtggtggtgaaggagct
ggaactagccgacgaaggagaattgcttccggatcagaaaagagcttcagcggtcggtct
gtctctcgttctccagcaaaatcgcgatctccgtcggggtctcgatctggttcgggttct
cgttcgggatcaggatctcgttcccgttcacgttcctctggacgatcgaattcaagatct
aaatcgcgatccaaatccggatccaaatcgcgttcgcgttcaaattcccgatcgaaatct
aggtccaaatcccgttccaaatcacgatccaaatcccgctctaaatcccgctctaaatcc
cgctctaaatcccgctctaaatcccgctctgtcagccgatcatcccgttcttcgcgttct
tctcggtcgtcacgttccaggtcaaaatcgaaatccggttcacgttcgcggtcaacatct
cgctcgaaatctggatctcgttcaaaaacaccaaaatctggctctgatgattcggattga
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integrated database retrieval system
