KEGG   Daphnia pulicaria: 124344042
Entry
124344042         CDS       T08670                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
dpz  Daphnia pulicaria
Pathway
dpz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dpz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124344042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpz03021]
    124344042
   03019 Messenger RNA biogenesis [BR:dpz03019]
    124344042
Transcription machinery [BR:dpz03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     124344042
Messenger RNA biogenesis [BR:dpz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     124344042
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCHC zf-CCCH_3 zf-CCHC_4 zf-CCCH_4 Lin-28A-like_zf-CCHC_2 zf-C2H2_10 zf-CCCH_10 zf-CCHC_3
Other DBs
NCBI-GeneID: 124344042
NCBI-ProteinID: XP_046653392
LinkDB
Position
6:490333..491553
AA seq 236 aa
MVCTLFTKGQCQRASFCPYRHLRADRTIVCKHWLRGLCKKGDQCEFLHEFDMAKMPECYF
YARFSACHNKECPFLHIDPETKIKDCPWYDRGFCRHGPTCRHRHVRRVLCMNYTAGFCPD
GPECKFVHPRFELPPLPDDIKGDKRKMPLVCHFCGEVGHKAAQCPKIPSESKDIYRTPAD
ASTHANNASQAQRDRTNLRPLDEVTCYRCGLRGHYANRCNKGHLAFLSNQPTEERS
NT seq 711 nt   +upstreamnt  +downstreamnt
atggtatgcactctgttcactaaaggtcaatgccagagagcaagtttttgcccatacaga
cacctcagagcagaccggacaattgtgtgtaaacattggctcagaggactatgcaagaaa
ggagatcagtgtgaatttctccatgaatttgatatggctaagatgccagagtgttatttc
tatgccagattcagtgcttgtcacaacaaagaatgccctttcttacacattgaccctgaa
acaaagatcaaagattgtccttggtatgatcgtggtttctgccgtcacggaccgacttgc
cgacaccgtcatgttcgacgtgtgctctgcatgaactacacagcaggcttctgtcccgac
ggccccgaatgcaaattcgtccatccgagatttgaattacctccacttccagatgatatc
aagggtgacaagagaaagatgcctctagtctgccatttctgtggagaagtgggacataaa
gctgctcaatgtccgaaaattccatcagaatctaaggacatttaccgcacgcccgccgat
gcctctactcatgcaaataatgcttcccaagcccagagagatcgaacgaatttgagacct
ttagatgaagtcacctgttatagatgtggactgcgcggccactatgcaaatcggtgtaac
aaaggacatctggctttcttgagtaaccagccaacagaagaaagaagttaa

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