Daphnia pulicaria: 124344466
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Entry
124344466 CDS
T08670
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124344466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124344466
Spliceosome [BR:
dpz03041
]
Complex A
U1 snRNP components
U1 related factors
124344466
Complex B
124344466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Spherulin4
WW_2
Motif
Other DBs
NCBI-GeneID:
124344466
NCBI-ProteinID:
XP_046653973
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Position
6:complement(13977804..13981634)
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AA seq
816 aa
AA seq
DB search
MSGSGTSSSMSAPVVPSGSFPSALPPYGIPPPGFIPPTPGIPPPFGVAMPSMAPPSVFGV
PPFGASAVPPSGFFPQTMPAQGSIENSENKRTWTEHKSPDGRTYYYNNLTKQSLWDKPDE
LKTAAEIMLSQCPWKEYKTEDGKIYYHNVSTKESSWTIPPELGELKSKIATEESIKTTIA
NGQTGTEILSSTVQISTAAMTVSQSVVADSLPTPTRAPISALDQAMAATLAAITVPSPQT
EDSMDAKPSPSSDSRTSTPEPKTTFKDKREALEAFKELLREKNVPSNASWDQALKYIQRD
PRLAALGKLTERKQAFHAYKTQKQKEEKEEQRLKAKKAKEDLEAFLLVDSSISSTTKYFR
CEEIYGNLEVWKNVPEGERRDIYEDAIFHLSKREKEEEKALRKRNMKNLTRVLDSITDIT
HRTAWTEAQQLLLDNPSFAEDNDLLAMDKEDALVVFEQHIRELEHEEEEERERGKRRIKR
LQRKNRDSFLNLLDELHENGKLTSMSLWVELYPIISTDLRFSAMLGQPGSNPLDLFKFYI
EDLKSRFHDEKKIIKEILKQKSFEVDIKTTFEDFATVVCEDKRSVILDGGNVKLTYNALL
EKAEGREKERLKEENRRSKKLESAFRNLLRAKELDHLVSWEDSVSKLEGDPAFDAITEES
DRIRIFKEYQRDMEETCGHHHSRSKKNKKKEKKQKRRSSSSRSPSTTRSGSRSKSRSKSP
SRSKSDENEAKLVDEELPSTHKKSKKKKSKKKKERSRSPSSDSEENRTKEKKKDKEKKSR
NDSGNDKKNKEDGEWSEDELERRRRLLLEQLAEEHQ
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagtggaacttcatctagcatgtcagcaccagtagtaccatcaggatctttt
ccatcagctttacctccatatggaatacctcctccaggtttcatacctccaactcctgga
attcctccaccattcggggtggcaatgccaagcatggcacccccttctgtatttggtgta
ccaccctttggcgcttctgcagtcccaccctcaggttttttccctcaaactatgcctgca
caaggaagtattgaaaatagtgaaaacaagcgcacctggactgaacataaatccccagat
ggaagaacatactactacaacaacttaactaagcagagtttgtgggataaaccagatgag
cttaagactgcagctgagataatgctttcacaatgtccgtggaaagaatataaaactgag
gatggaaaaatttactaccacaatgtttctactaaagaatcaagttggaccattccacca
gaacttggagagctaaaaagtaaaattgcaactgaagagtcaattaagacaacaatagca
aatggccaaaccgggactgaaattttatcatcaacagttcaaataagtacagcagctatg
acagtgtctcagtcggttgtcgcggatagcttaccaactccaacgcgtgctccaatatca
gctcttgatcaagcaatggcggcaacattggctgcaataaccgtaccatctccacaaact
gaagatagtatggatgccaaacctagtcctagcagtgacagtagaactagtactccagaa
ccaaaaacaacctttaaggacaaaagagaggcattagaggcatttaaagagctgttaagg
gaaaagaatgtaccaagtaatgccagctgggatcaggctctaaaatacattcaacgagat
ccccgattggctgcattgggaaaattaactgagcggaaacaggcattccatgcttacaag
acccaaaaacagaaagaagaaaaagaagaacaaaggctaaaagccaagaaagccaaagag
gatttagaagcttttcttcttgtagactccagtatcagttcaactaccaagtactttcgt
tgtgaagaaatctatgggaaccttgaggtatggaagaacgttccagaaggtgaacgtcga
gacatttatgaagatgccatttttcacttgagtaaaagggagaaagaagaggaaaaagcc
ctgcgtaaacgtaatatgaaaaatttaacccgtgtgttagattctatcaccgatattacc
cacagaacggcatggactgaagctcaacaacttctgcttgataatcctagctttgcagaa
gacaacgacctattagcgatggataaagaagacgctttagttgtttttgaacaacatatt
cgtgaattagagcatgaagaagaggaagaaagggagagaggtaaacgaagaattaaacgt
ctacaacgtaaaaaccgggattctttcctgaatctgcttgatgaactacatgaaaatggc
aaattaacttcaatgtctttatgggtcgaactatacccaataataagcaccgacctacga
ttctctgctatgctagggcagccaggttcgaatccacttgacttgtttaagttttatata
gaagacttgaaatctcgatttcacgacgaaaagaaaatcattaaggagattcttaagcaa
aaatcgttcgaagttgatatcaaaacaacatttgaagactttgctactgtggtgtgtgaa
gataaacgatcagtaattttggatggcggcaatgttaaattaacttacaacgctttactt
gagaaggctgaaggtcgggagaaagaaaggttaaaggaagagaaccgacgttcaaagaaa
ttggaaagtgcatttcgaaatcttcttagagctaaagaattggatcatttagttagttgg
gaagattcagtatcaaaattggaaggagatcctgcatttgatgcgattactgaggagtcc
gatcgtattcgtatatttaaggagtatcaacgtgacatggaagagacatgtggccaccat
cattcgagatctaaaaaaaataagaagaaagaaaagaaacaaaaaagacgatcctcatct
tcgaggtcaccttccaccacaagatcgggttccaggtcaaaatcgcgatccaaatctcct
tcccgatctaaatctgatgaaaatgaagcgaagctcgttgatgaagaactaccatctact
cataagaaaagcaagaaaaagaagagcaaaaagaagaaagaacgtagtcgttcgccgtcg
tcagattccgaagagaatcggacaaaggaaaagaagaaggacaaagaaaaaaaaagcaga
aatgacagcggtaatgataagaagaataaagaagacggtgagtggagtgaggatgaacta
gaacgaagaaggcgactcctgttggaacaactggcggaagaacatcagtga
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