Daphnia pulicaria: 124344490
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Entry
124344490 CDS
T08670
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124344490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124344490
Enzymes [BR:
dpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124344490
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
124344490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2703
Motif
Other DBs
NCBI-GeneID:
124344490
NCBI-ProteinID:
XP_046653999
EnsemblRapid:
LOC124344490
LinkDB
All DBs
Position
6:2422086..2427416
Genome browser
AA seq
1381 aa
AA seq
DB search
MPKQQFRDTDVISKVVKVNFGIGSQQQIQQQAHIPIVANELYNHDSRTPVQFGMLDRRMG
INVEGPLCTTCGKGLQNCLGHFGYIDLQLPVFHVGFFKATITALQTICKTCSHVLLDKKM
RKIYRAKLRTHNLPYLQKKALRKQIVEKCKKVTRCPNCNDINGTVKKCGMLKISHEKFEN
FKRDSSTIQKQLVAYDTAVQFNKEIEPMLSSALINILNPLEVFGLLKRIPDEDVQYILMN
PEHGHPKDMILTRVPVPPVCIRPAISSKSGTIEDDLTRKLREIVNLNELVTMKLINGESC
SSLMETFDDLQLQCALYINGELPGIPPNLQPKTPSRGLVQRLKGKEGRFRKNLSGKAVDF
CARTVISPDPNLRIDEVGVPELIAKLLTYPTIVNEANIEIMRKLIRNGPDIHPGAIFLKE
KDSKLPIFLKYGNRRETLARNLKVGDLVERHMMDEDIVLLNHQPSLHKLSIMCHRAKILP
GLTFRLNECVCTPYDADFDGDEMNLHLPQTEEARAEALILLGTKSNLVTPRNGQLLIAAI
QDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFS
LILRPNPGDRIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSCSKIN
IFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLLKEKQNLLDSGYS
KCDEYIRLLTIGQLPCLPGCNEEESLESKILKELSGIRDQVGEVCIKELHPSNSPLVMSK
SGSKGSLINISQMIACVGQQALNGKRVPNGFEDRSLPHFDLHSKIPAAKGFVSNSFYSGL
SPTEFFFHGMGGREGLVDKALKTSDVGYARRRLSKSLENFCCRYDSTVRNSSGEVIQFDY
GGDGLDPTYMEAKDRPVDFQRTLDHTKAASPYPDEEPLDDIELKGSFDSIMEIDEFKTLG
IDFKHELRVFVENQVKRIKSVREMYKMVGRALHPVEKHLERITVGQLVEFCDLAKEKYER
AKIEPGTAVGALCAQSIGEPLAKMTCNPFAGVASKIPGVPRIKEIIDAYKSISTPVISTQ
LLKDDDPEYARRVKGRIEKTTLGEVTEYFEEVYKHNGCFLMIKLDVNRIRLLKLEVNASS
IRLSLCDGKLKIKPSFVAVLNETEIIIRCTASTKLSMNDVMQNLKRELPKQVIKGFDSIT
RVVINTDDTRNPPMYSLVVEGNNMREVMATYGVKGSSTTSSNIFEVFNTLGIEAAKETIA
QEIKSTMESHGMSVDRRHVALLSSFMSHRGEILGVTRHGLAKMKESVLNLASFECTSEHL
FDAAYYGQEDEITGVSECIIMGSPMSIGTGSFKLIYKTESTVPLKTRPLIFDVPEYHVPM
V
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcagcagtttcgcgacactgatgtgatcagtaaagttgttaaagtgaacttt
gggataggaagccaacaacaaatacaacaacaggcccatattccaatagtggcaaacgag
ctgtataatcacgattctagaacacctgtgcaatttggaatgctggacaggagaatgggg
ataaatgttgaaggtccactttgtacaacatgtggaaaagggcttcaaaactgtttaggt
cattttggttacattgatttacagcttcccgttttccatgttggatttttcaaagctacg
ataactgccttgcaaactatttgcaaaacttgctctcacgttttgcttgataagaagatg
agaaagatttatcgagctaagcttagaacccacaacttgccctatcttcaaaagaaagca
ctgaggaagcaaattgtagaaaaatgcaaaaaagtaacacgctgccccaattgcaatgat
atcaatggcacggtgaaaaagtgtggaatgttgaagatctcccacgagaaatttgaaaat
ttcaagagagacagttctacgatacaaaaacaactggtggcctacgatactgctgtgcag
ttcaacaaagagattgaaccaatgttgtcatctgctttgatcaacattttgaatcctctt
gaagtatttggccttcttaagagaataccagacgaagacgttcagtacatactgatgaac
cccgaacacgggcacccaaaggacatgattctcacccgtgttccagttcctcctgtttgc
attcgacctgcaatatcttctaaatcgggaacaatagaggacgatttaacaagaaaactt
agagaaattgtcaacttaaacgagttagtgaccatgaaactgattaacggtgaaagttgc
tccagtcttatggaaacttttgacgatttgcaactgcaatgcgccctgtacatcaacgga
gaactccccggaatcccgccgaacctgcagccaaaaacaccatctcgtggtttagttcaa
cgcttaaagggaaaagaaggacgctttcgaaaaaatctttcggggaaggcagtcgacttt
tgcgctagaacagtcatttcgcctgacccgaatctgcggattgatgaagttggtgtcccg
gaattgattgcgaaacttttgacttaccctactattgttaatgaagccaatatcgaaata
atgagaaaattgataagaaacggaccagatatccatcctggcgccatttttctaaaggaa
aaagattcaaaattgccaatattcctgaagtacggaaatcgtcgcgaaaccctagctcga
aacctgaaggtcggcgatttggttgaaaggcatatgatggacgaagacatcgtattgctc
aaccatcagccttcgttgcacaaactttcgattatgtgtcaccgagccaagattttgccg
ggcctcactttccgccttaatgagtgcgtctgtacaccctacgatgcagatttcgacggt
gacgagatgaatcttcatcttcctcaaacagaagaagcccgcgcagaagccttgatccta
ttagggacaaaatctaacttagtgactcctcgaaacggccaattattgatagcagctatt
caagatttcataactggagcttatttactgacgttgaaggatgctttcttcgatcgagcc
aagacttgccaaatggttgcatccatgcttgcaggtgacgaggtaaacatggtcattaaa
cttccacctccgtgtatccaaaaacccgcagccctatggtcaggaaaacagattttcagt
ttgattcttcgtcctaatcctggagatcgcattaaagttaacctgagaaccaaaggaaaa
gagtattcaaagaagaacgaagagttttgcgtcaatgacgggtttctgttggtccgtaat
tctgaggtgttagcaggatgcgttgacaaatctaccattggatcttgttcaaaaatcaac
attttttacgtacttcttcgcgactacggagaggatttcgctattcaggcaatgtggaaa
ctttgccgagtagcttcttattatatgatgaaccgaggattctctatcggcattggtgat
gtaactcctggtaaaactttgctgaaagaaaagcaaaatctcttggactctggttattcc
aagtgcgacgaatacattcgtttactcactatcggtcagttaccttgccttccgggatgc
aatgaagaggaatctttggaatcgaaaatcttgaaagaactttctgggattcgtgaccag
gtcggagaagtgtgcataaaggagctgcatccgagtaacagcccgttggtcatgtcaaaa
agtggttcgaaaggatcactaatcaacatttctcagatgattgcctgcgtaggacaacaa
gctttaaacggcaaacgagtgcccaatggttttgaagaccgtagtctccctcactttgat
ctacattcgaaaatcccagctgcaaaaggttttgtctccaacagcttttactccggactt
tctcccacggaatttttcttccacggaatgggtgggcgtgaaggattggtagataaagcc
ttaaaaacaagtgatgttggttatgcgcgacggcgactaagtaaatccttggaaaacttt
tgttgccgatacgattcgactgtgaggaactcctccggagaggtcattcagttcgattat
ggaggtgatgggctagatcctacttacatggaagccaaagatcgcccggtcgacttccag
cgaactcttgatcataccaaagccgcttccccttatccagatgaagaacctttggatgat
attgaactgaaaggatcttttgactcgattatggaaatagatgagtttaaaacgcttggg
attgattttaaacatgaactcagagtttttgtcgagaaccaagtcaaacggattaaatcg
gtgcgagagatgtacaaaatggtgggacgagcactacatccagtggaaaaacacctggag
cggataaccgttggccaattggttgagttctgtgacttggcgaaggaaaagtacgaaagg
gctaaaattgagccaggtactgccgttggagctctttgcgctcaaagtattggagaaccc
ttagcaaaaatgacgtgtaatccatttgctggtgttgcttccaagataccgggagttcct
cgaattaaggaaatcatcgatgcttataaatcaatcagtacgccagtcatttctactcag
cttttaaaagatgatgacccggagtatgctcgacgagtaaaaggacggatagaaaagact
acgcttggagaagtaacggaatacttcgaggaagtctataaacacaacggttgcttttta
atgattaagttggacgtgaataggatccgattgcttaaattggaagtgaacgcaagttcc
attcgacttagcctctgcgatggaaagctaaagattaaaccgagtttcgttgcagtcctc
aatgaaacggaaattataatcagatgcactgcatccacgaaattgtcgatgaatgacgtt
atgcaaaatcttaagagagagttgcccaagcaagtcatcaagggcttcgatagtatcact
cgagtggtaataaacactgacgatacgagaaacccaccgatgtattccttagttgttgaa
ggtaacaacatgcgagaagtgatggcgacttacggtgttaaagggtcctcgactacatca
agcaatatttttgaagttttcaatactttgggaatcgaagctgccaaggaaacgattgcc
caagaaattaaatcgaccatggaaagccacggcatgagtgtcgatcgtcgtcacgtcgcc
cttctttcaagtttcatgagtcatcgtggtgaaattctgggagtcacgagacatggattg
gccaagatgaaagagtcggttcttaacttggcctcgtttgagtgcacctccgaacattta
tttgatgcagcatattacggccaagaagatgagattactggggttagtgaatgcatcatc
atgggatcaccaatgtcaattggaacgggttcctttaagcttatatacaaaacagaaagc
accgttccactcaaaacaagaccacttatttttgacgttccagaatatcacgtccctatg
gtatag
DBGET
integrated database retrieval system
