Daphnia pulicaria: 124344504
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Entry
124344504 CDS
T08670
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124344504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124344504
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124344504
mRNA degradation factors
5'-3' decay
Decapping complex
124344504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
124344504
NCBI-ProteinID:
XP_046654015
LinkDB
All DBs
Position
6:complement(13306446..13309590)
Genome browser
AA seq
718 aa
AA seq
DB search
MEDGGFFGFDTSLPPVRRGPKQEIGDVELEDTYDALNDETFGVINADDDWEEEHEKLAEY
LGEIPKHDNSKINVEYTLDDFEESAYPGPQPVHLRNAIVDKSGNTEFEADNEDAANVAAS
VSQMLLDDDDIDTIISRPINYSRMENKLFGQMSPQSSIFNTDIVGSPSTPSIWSTQPSDI
RKSSEGSPKVVSVISNGNQVPPIREHNLLQEGLFKTVEELERHLLQQPKRLTMEELERNL
LSNRPLPSGSIRSVEEIEAELTRAHPPQQIGMMPPPHLQSYLRLPPPMSMSLPPPVRAPM
PHPMHMPLPMPLPRSNGPAPLPHQQNSQWNRRNHENTNQISPSSNDASKSHVNEKRQTFA
AENYDDYNGLMSTKEKQWLMSIQINQLISDNPYVEDYYFTVLRLRCLGKLPGRDSNEGPK
LIMHDRAKVESRTYAPTQFANSLGKLQVVTYTAPRRIIDVTISQSTPEMGQDPQVAVKDM
RKFKQILLDIEKMYVWLLDLEDAEMRVESLPKDTEPGPHHQATIEYQHKLQSFLSAGDRL
QQIMLVRKGKVLILRAWNRFSPQFQELIVRTILLNCLILIRRDNIDHVLVRFLPLVNDVL
ASLEDLQGLVSMARLIDAAQKNSGYTSVTSAKVGLDFISLILCRGTELMPKCSDELTRGQ
WSAFVHNVGNSIIAAPTALKSDLGLLNLEHFQQVGMEESKLKALKIVLDTLTHAGQEA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggaggattttttggttttgacacttctttgccgcctgtcaggagaggtcct
aagcaagagattggcgatgttgaacttgaagacacctatgatgccttaaatgatgaaaca
tttggtgtcattaatgcagatgatgactgggaagaagaacatgaaaaattggctgagtat
cttggggaaatacctaaacatgataattctaaaatcaatgtggaatataccttggatgac
tttgaagaatctgcttatcctggaccacagcctgttcatctgaggaatgctatagtcgac
aaaagtgggaacactgaatttgaagcagacaatgaggatgctgctaatgtcgcagccagt
gtttctcaaatgttattggacgatgatgacattgacaccattatttctaggcctattaac
tattctcgaatggaaaataagttgtttggacagatgtccccacagtcttccatatttaac
actgacattgttggatccccttcgacaccatcaatatggtctacacaaccttcagatata
agaaaatcctccgagggaagccccaaagttgtttctgtgatttctaatggcaaccaagtt
ccaccaatcagagagcataatttgcttcaggagggattattcaagactgttgaagagctc
gaacgacatttactacaacaacctaaacgactgacaatggaagaactcgaacgaaattta
ttgagtaacagacctttaccttcgggatcgattcgctcggtggaagaaattgaagctgag
ttaacaagagcacacccaccgcagcaaattggaatgatgccccctccgcaccttcagtca
tatttaaggctccctccacctatgagcatgtctttacctccacctgttagagccccaatg
ccgcatcctatgcacatgccattaccaatgcctttgccacgatcgaatggtcctgctcca
ttgcctcaccaacaaaattcgcagtggaatcgcagaaatcacgaaaatactaatcagata
agcccgtcttcaaatgatgcatctaaaagccatgtgaatgagaaacgacaaacgtttgct
gctgaaaactacgacgactacaatggactgatgtcaactaaagagaagcaatggttgatg
agcattcagatcaatcagttgatatcggataatccctatgttgaagattactactttacc
gtgcttcgattgagatgtcttgggaaacttcccggtcgtgacagtaacgaggggccgaag
ctcataatgcatgatagagctaaagtcgaatctagaacttacgcaccgacccaattcgct
aactcgttaggaaaacttcaagttgtaacatacacggcacctcgtcgtataattgatgtc
acgatatcccaatcaactcccgaaatgggtcaggatcctcaagtggccgtcaaggacatg
aggaaattcaaacaaattttgctggacattgaaaagatgtacgtttggctgcttgactta
gaagatgctgaaatgcgagtcgaatcgctaccaaaagacacggaacctggtcctcatcat
caagccaccatcgagtatcaacacaaactccaatcatttttgtcggctggagatcggctt
caacagattatgctcgtcaggaagggaaaggttttgattcttcgggcttggaatcgattt
tcaccacaattccaagaattaattgttcgcacgattttgctgaattgtcttattttgatt
cggcgcgacaatatcgaccatgttcttgtacgttttctaccattggtgaatgacgtactg
gcttcgctagaagatcttcaaggtcttgtcagtatggcacgattgattgatgcagctcag
aagaacagtggatacaccagtgtcacatccgccaaggtgggcctcgacttcataagtttg
attttgtgtcgagggaccgaactgatgccgaaatgctcagacgaacttacaagaggtcag
tggtcggcattcgttcacaacgtcggcaactctatcatcgctgctcccacagcactgaaa
tcggacctagggctgttaaatttagagcactttcaacaagttggcatggaagaatcgaag
ctgaaagcattgaaaatcgttttagatactctcacccatgctggacaagaggcttag
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