Daphnia pulicaria: 124344508
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Entry
124344508 CDS
T08670
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124344508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124344508
Spliceosome [BR:
dpz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124344508
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_IFT122_1st
Ge1_WD40
eIF2A
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_Nup120_160
Nbas_N
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
124344508
NCBI-ProteinID:
XP_046654024
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Position
6:13287176..13289065
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AA seq
432 aa
AA seq
DB search
MSSTTGFAITIDDGEIRKHLRQLGEPITLFGEGPADRRNRLKELLSVHGHDLIDRKKEDE
KEIVKVEKDQTETTWYHEGPESLKIARLWLAYYSLPRAKQRLSNVKLESEIPESTRTAKR
QEMVKRMRGMNIMCSQVGDGRPISYCQFSPSGNLLATASWSGLCKLWNVPDCTLSHSLRG
HKCSVGAIVFHPQATLSLEPSELNMASCSMDGAVKLWNLESEEPIADMEGHAPHRVSKVE
FHPSGRFLATCVFDNSWRLWDLEQGVEVLHQEGHSKPVYNIAFNVDGSVAITGGMDSFGR
VWDLRTGRCIMFMEGHLKGVLGIDISPNGYHIVTGSEDNTCKIWDLRKRSCIYTIPAHTN
LVSSVKFERSSGQYIVSSSYDCTAKIWASNTWQPLKTLSGHDGKVMAVDVSPDGSFIATA
SYDRTYKLWSPE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccacaaccggtttcgctatcacaattgacgatggggaaattcggaaacatctt
aggcaattaggtgaaccaataaccctttttggtgaaggacctgctgatcgccgaaataga
ttaaaagagttactctcggttcatggacatgatttgatcgatagaaaaaaagaagatgaa
aaagaaattgtgaaggttgagaaagatcaaactgaaaccacttggtatcatgaaggtcct
gaatcactcaaaattgctcgtttgtggttagcatattattccctccccagagcaaaacaa
aggttatctaatgtgaagcttgaatctgaaataccagaatcaacaagaacagccaaaagg
caggaaatggtgaaacggatgagaggtatgaacatcatgtgcagccaagttggtgatgga
agaccaatatcatattgccaattcagcccaagtggaaatttgttggccactgcctcctgg
agtggcctgtgtaaattgtggaatgtacctgactgcactttgtctcattcattaagaggc
cacaagtgtagtgttggagcaatagtcttccatccacaagccaccttgagcttagaacct
tcagaattaaatatggcttcatgttccatggacggcgcagtcaaattgtggaatttagaa
agtgaagagccgattgctgatatggaaggacatgctccgcatcgagtgtcaaaagttgaa
tttcatccttctggaagatttttagctacatgtgtttttgataattcctggaggctatgg
gatctagaacaaggtgtagaagttcttcatcaagaagggcattccaaacctgtatacaac
atagcattcaatgttgatggttcagtggctatcacaggtggcatggactcttttggtcga
gtatgggacctcagaactgggcgctgcatcatgtttatggaaggtcatttaaaaggtgtc
ttgggcatcgatatatcacctaatggctaccacatagtaactggaagtgaagacaatacc
tgtaaaatatgggatttacgtaagagatcctgtatctatactattcctgcacacacaaat
ttagtgtcgagcgtgaaattcgaaagaagttccggacagtatattgtctcatcttcatat
gactgtaccgcaaagatatgggcgagtaacacttggcaaccattgaaaaccctttcggga
catgacggaaaagttatggcagttgatgtatcgcctgacggttcgttcatcgccacagcc
tcgtacgatcgcacttacaagctttggtcccctgaataa
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