Daphnia pulicaria: 124344517
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Entry
124344517 CDS
T08670
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124344517
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124344517
Spliceosome [BR:
dpz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124344517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
DEAD
OB_NTP_bind
R3H
AAA_19
HA2_N
nSTAND3
AAA_22
ATPase
SRP54
PhoH
AAA_14
ResIII
AAA_7
T2SSE
AAA_11
Ank
Ank_2
Cas3-like_C_2
AAA_16
Ank_5
Ank_3
AAA_29
AAA_23
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
124344517
NCBI-ProteinID:
XP_046654033
LinkDB
All DBs
Position
6:6375082..6381119
Genome browser
AA seq
1419 aa
AA seq
DB search
MASARNRNGRNNPMPNIYESMKKGLDILLKAFRDDEEAEEYTFDASLSTEQRAYIHASAQ
SMGMKSKSQGKGSERRLTVTKTVVHVKNKVSKLNILPHTVERATKLLQEFPLTNEELQDV
HPLQKQVANIATGQQSHADCIKYHMPIIPQSAKSSALIADRKSLPTWSHREEILNMIAQN
KVVMITGDTGSGKTTQVPQYLLELFSERNEPVRIICTQPRRIAAISVAERVANERGEQLG
GTVGYQIRLENRMSSKTALMFCTTGILLRTLMYQEGNLERVTHLIIDEVHERDRFVDFLL
GVLKSRLPRLPKLRLILMSAALDISVFSNYFGSCPVMHVQGKCFPVAEYFLEDVLELTDH
LGNSTPLEIGVWDGDDKNTKNGAVGFSRNGGQAARMSKLEKSKPCVLDSGAKLTFDSWIQ
EVFVLDNSDALGRLADAVMRSHMPINYKHSQTQITPLMVVAARGRIDLVNSFLQLGADPA
LTAGQWTAANLARSMQHHSVASALEVYQSGKAESLLQNYKFRYDEEIVNVDLVLDLLHVI
EQHNSEGAVLIFLPGYDEIMNIRDRIMYNDSRFAGSGKFEVYTLHSSMQSGDQRRVFFRP
PSGKRKIVLSTNLAETSITIDDIVFVIDTGKVKVKSFDALTGVSALKAEWVPQASAIQRK
GRAGRCREGICYHLFSRERYESFEKYQIPEIFRVPLEELCLQSKNLAPIDLSIEQFIGQV
PEAPKPHVIQRAVKMLQWMDALDPWENVTDLGRLLLELPVEPRAGKMLLTATVLHCLDPV
LTIVCCLSHRDPFLLPAEPNEKKIAAARKLELAAGTLSDHMAMLRAFNLWLAARANGKER
EFCHRHFLSSATMDVIHQLRIQILDQLRKSGFVRSFQELNTNASSWVAIKACILSGLYPQ
VARRCRSGKLTTRREASVRLHMTSALLGENGHTSQRKAITQLPSEWMVYEEISRYGGLVA
SLRCVTLVNTVALAIFGGHCRLSNESIKDPVFSSESEDYDDNYEDESTTDDSSDESDDIE
ELNEGLHDLVLAEKFCQSPLPDHRKSNASKPTKKNNPKALSEFHLDEWICLKMETNPAHQ
LFALRQKWQALFARRMRDPIGPELPGDKQVVDTLLNILSKEEQASGLPPSPEFLGIADVR
RPNKSYASDNFRSNRRPNPRPGLESRNYCPPNPRPNTKPNSWQANQNSNDVPEGGGDKNW
RANFPRNNSGTFRPNRSEVFSRAPKGKDLGSLKYKTGIADVDFLVGGTRTSASHAEGNNV
EHERGQWFGNDTNRSSSMHDNGTSTYNKGWRNEVDARNGFWFSKKSKSKYQFTTGKGSTN
QMPNSPRDSQPPPANRLAQSAGKSPSENQANKYPLDQPRRIVAKESAQFAQGSVPRLPRE
RDSEMPNQESNTNSQSSRKNRKKPQKRKDTNAAHPPTPS
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgccaggaatagaaatggcaggaataatccaatgccaaacatatatgaatca
atgaagaaaggtcttgatattctcctaaaggcatttcgggatgatgaggaagctgaagaa
tatacatttgatgcaagcctttctactgaacaacgggcatacattcatgcttctgcacaa
agtatggggatgaaatctaaaagtcaaggaaaaggaagtgagagaagactaactgtaaca
aaaactgttgttcatgtgaaaaacaaggtttcgaagttaaacattcttccccatacagtt
gaaagggcaaccaaattgcttcaggaatttcccttgactaatgaagaactgcaagatgta
caccctcttcagaaacaagttgctaatattgcaactggtcaacaatcccatgctgactgc
ataaagtatcacatgcctatcattccacaatctgcaaaatcctctgccttaatcgctgat
cggaaatcccttcctacttggagtcaccgcgaggaaattctgaacatgatagcacaaaat
aaagtggtaatgataactggtgatacaggttcagggaagactactcaggttcctcagtat
ctgttggaactcttctcggaaagaaacgaaccggttcgcatcatttgtacacaaccgcga
cgaattgctgctatctcggtcgctgaaagagtcgcgaacgaacgtggcgagcaattggga
ggaactgtgggctatcagattcgccttgaaaatcgaatgtcatccaaaactgctctgatg
ttttgcacaaccggaattttgcttcgaacgctgatgtaccaggaagggaatctggagaga
gtcacacatctaattattgatgaagtgcatgaaagagatcgcttcgtcgattttctgctt
ggtgttttaaaatctcgtctcccacgactgccaaaattacggcttatccttatgtctgcc
gccttagatatcagcgtcttctccaactactttggcagttgtccagttatgcatgtgcag
ggaaaatgttttcccgtcgccgagtactttcttgaagatgttttggagctgaccgatcat
ctcggtaattcaacaccattggaaattggcgtttgggatggcgacgacaaaaatacaaaa
aatggagcagttggattttcccgaaacggaggacaagcggctcggatgtcaaaactagag
aagagcaagccatgtgttctggattctggtgccaagttgacatttgattcttggatacaa
gaagtttttgttttggacaactcagatgctttgggccggcttgctgatgccgtgatgcga
agccatatgcccatcaattacaaacattctcaaacacaaattactccactaatggtcgtt
gctgcccgaggacgtattgacttggtgaactcgtttttgcagcttggcgctgatccagct
ctgacagctgggcagtggactgctgccaacttagcacgctcaatgcaacatcattccgta
gccagtgcgctggaagtgtatcagtcgggaaaagcggagagtttgctacaaaattacaag
tttcgctatgatgaagaaattgtcaacgtggatctagtgttggacctgctccatgtaatc
gagcaacataattctgaaggagcagtcctcatctttcttcctggctatgatgaaatcatg
aacattcgtgaccgaatcatgtacaacgactctcgattcgccggttcagggaaatttgag
gtctatactcttcactcgagtatgcaatcgggcgatcaacgacgagtcttctttcgccca
cctagtggaaaacgcaaaattgttctgtcgacaaaccttgccgagacgagtatcacaatt
gacgacatcgtatttgtcatcgatactggaaaagtcaaagttaaatcttttgacgcgctt
actggtgtgtcggcactgaaagcggagtgggttccacaagcttcagcaattcaacgcaaa
ggaagagcaggtcgttgcagggaagggatttgctatcatctcttctcccgtgaacgctac
gaatcattcgaaaaatatcagatcccagaaattttccgagttccattggaggagctatgt
cttcagtctaaaaatcttgcaccaatcgatttgtcgattgaacagtttattggccaggtt
ccagaagctccaaaacctcatgtgattcaaagggccgtgaagatgttacaatggatggat
gccttggatccctgggaaaatgtcaccgatcttggtcggttgttgttagagttgccggtt
gagccaagagccggtaaaatgctacttaccgctacggtacttcactgtttggatccggtt
ttgacgattgtctgctgcttaagccatcgagatccatttctcttgcctgctgaacccaac
gagaaaaaaattgctgcagcacgcaagctcgaactcgctgctggtactcttagcgaccac
atggccatgcttcgagcctttaatttgtggctagctgcccgtgccaacggcaaagaaagg
gagttctgtcatcgtcactttttatcgtcggcaactatggacgtaatccaccaattgcgc
attcaaattttggaccagctgcgaaagtctgggttcgttcggagtttccaggaactgaat
acgaacgcttccagctgggttgcaattaaggcgtgcattctctctggtctctatcctcaa
gtagctcgacgttgtcggtccggcaagttgacaacccgccgcgaagcctcggtacggctt
cacatgacgtcggctcttttaggtgaaaatggccacacatctcaaagaaaggccatcacc
caacttccgagtgaatggatggtttacgaggaaatatcaagatacgggggacttgtggct
tcacttcgttgtgtaaccttggtcaatactgtcgctttggctatttttggaggacattgt
cggttgtcaaatgagtctatcaaagaccccgttttctcatctgaaagcgaagattatgat
gacaactatgaggacgaatcgaccacagatgactcatctgacgaatcggatgatatcgag
gagttaaatgaaggactacatgacttggtattggccgagaagttttgccagagtccgcta
ccagaccataggaaatctaatgctagcaaaccgacgaagaagaacaacccgaaggcacta
agcgagtttcatctggatgaatggatttgcttgaagatggaaacaaaccctgctcatcag
ttgtttgcattacgtcaaaagtggcaggcgctattcgcccgtcgcatgcgagatcctatc
ggtcccgaattgccaggcgataaacaagttgtggacacacttctcaatattctctcaaaa
gaggagcaagcgtccggacttccaccttcaccagaattcttgggtattgctgatgtccga
cgacccaacaaatcctatgcgagcgataattttcgttcaaatcgccgacctaatcctcga
cccggattagaatctagaaactattgtccgccaaaccctaggccaaatacgaaacccaat
tcctggcaggccaaccaaaattccaatgatgttccagaaggcgggggtgacaaaaattgg
cgagctaattttccacgaaataattctgggaccttccgcccgaatcgttctgaagtgttt
tcaagagccccaaagggtaaagatctaggcagtctgaaatataagaccggaattgcagat
gtggatttcttggttggcggtacgcgtacgtcagcatcgcatgctgaaggcaacaacgtc
gagcatgagcgtgggcagtggttcggaaatgacacaaatcggtcctcttcaatgcacgat
aatggcacatccacttacaataaaggatggaggaatgaagtggatgccagaaacggtttc
tggttctcaaaaaaatccaaatccaaatatcagtttacaacgggaaagggcagtacgaac
caaatgcccaattcacctagggattcacagccgccacccgcgaacaggctggcacagtcg
gctggcaaatcgccatcagaaaaccaagcgaacaaatatcccttggaccagccccgaagg
atcgttgcgaaagagagtgctcaatttgcgcagggttctgtgccgcggctgcccagagaa
agagattcagagatgccgaatcaagaatcaaacacgaacagtcagtcttctagaaagaat
agaaagaagccccagaagcggaaagatacaaacgctgcccacccgcccactccttcttaa
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