Daphnia pulicaria: 124348821
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Entry
124348821 CDS
T08670
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dpz03009
]
124348821
Ribosome biogenesis [BR:
dpz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124348821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
HEAT_EF3_N
MMS19_N
TPR_CAND1
Sca2
DUF6382
PhnI
Motif
Other DBs
NCBI-GeneID:
124348821
NCBI-ProteinID:
XP_046655065
LinkDB
All DBs
Position
7:complement(16411590..16421725)
Genome browser
AA seq
2706 aa
AA seq
DB search
MVKTKPTKHKEDNTFKFKTFAERLSSVNVDVIHRVNLKRNVVPDETETFFFEALEKWTDL
NCTEGFTIFCKRVGRDVQSLGQLLLHEDRILNLLLEHIDKENVLFLEPILDLVVAVAKDL
QSDFYPKFPNFFSKLIDLLQVREPEITEWTFTALAYLYKNLWRLLIKDIDNVYGLLLPLL
ASNQPEHVQQFATESFAFIGRKVGDRAGFVELIFTKLRENAGDSLGVGQLLFQIVKGIKN
QFHTSLELFLPIYFKSLLSIEQNVCNDPVFIAVNHCFLLMARHTSQQHCARVWILLLAAI
DSSKRPGALGLLLLFQQWVEFREGELITDTLAVSKTLVALLNDQQLDETEQQSVSVTVAE
LMKSTKVSLPIEQTSKLGHLVFAYHWKPEIVLEFTLQVSTYGFFESHLLPHYITFCHSLG
KKDRETRSQLLKNLASLISIKASLPKNGNDMDNFKIYPLEFTFAMRKSSDTDSVPHLIQT
ILEENLEVMINEDFQTYVNALVCLPHLRPIDSVKAIKVLKKIVKEIADTVESNAEEPHTK
RAKTTRPVDYSERLGLVLSLAILGIRHFSSNLEKDVPWQMIKSAFLNETMSTSLFYLRAA
DFYLTSLHESGNEDTFSLQVLCQVYDVIGQNLGSPYHEVRLLTLHILSLFSPPMAAPPEN
VNPTPVFQTCLNAELISAGVREQREKLVHLQNLEAERVIYSLPAGGHFAKAPLQYLLSQL
YINFRPLWEPVLKLVESHAFNMDSPKFWSVYLPFLERVRRCQAEEIRDPSAQMEYLNLAV
TVERIDFTNTRSLAWSGLSRIGNVAEKEHAIIVPLFLHFWNTEYCVNDGNIAQTQDLTDG
VQVESTKGERGNIIKLLSSYLSVLASFQQPQNMTSEPEVTKILLRLLSHRSGDIQKQALD
CLVAYGYPYLMPYKDNLYRVLDDKSFRNEITSFSIDTLSSSIKSEHRAGLTSILIRILYG
KMMFKAGSGSTGKDNIQLRQAVILRYVAGLADSEIDVFLDLAFQLFSEFTRTEDVYQHVV
RTMREADPKLALPLKRIQGALVLMGTIFSKLGNIMKSTLPKLLHMLLNISAHIMGMLDKR
NEVEARHIAQLKNLRTIGWQRITQFFKKFERYPWSSAEIEAVFHVYIWPQLEMLSDQAFS
GVTPMLRLFQVWSENPRYFVLFGKAHPERPELTVLQPMLTLLSGGKAVTLVCSFLMDMVD
KLVTTADYGTVVEEDDDEKEEPIYIKPAFSVEWDSPLDSMVVDDVGEETKPNHGSKLLIP
HMSLVLVYLRKFITHGLNGRDLNVLMRISEYVNEPQLSTELARMIIPAIKVAVNRNRNSS
NLEEKLLRYLGTLANLVKTANNPQEFIGALSALFGTIEGRNVRHSLCKVMEVICVRDSSQ
GSLGELVSSMNKWDPQRLEEPDYTHRLKTHKEINVVLETGTPSFEWAALALYNSFNFIRT
EPDSSLIDNASLTLQIMTSAFDRWNFGKTLLNEHFIPQLRLLIRSPKETVRHEGVSILSK
AVSNCGSMNASLNSLRKIRKEGDVEVDFFENCRHLQTHRRSRALLRLSGLLKKDKTCING
ETITQYLLPLASCYLFNEEYAKHNHLIDAALECLQAIARCLSWQNYESLLRFYLSNMTRQ
IEYQKQAVKAVVAILNAFHFDLKNSKFKSYYAAKAIAAQTSEVQASVPEVPNVPDTSEES
SVAAVVEDGVVPPIIENESADHPDAELPEMVPEAEEKSSLNDAMATKIHSVISQQLLPEL
NAILTARSTREKQHKTVKDHYPEDDEILRVPIALALVNLLKNLPPGTLERSLPGMFSKVC
TFLKSRCNSVRETARETLIEMVISLGPECLSALMDAAYPILQRGYQVHVYIFTMHAILAK
LGEIGQLKAGSLDAVVYPLTELCKKELYGDTADEKEVDKIVSKLKEAKGVKAFNTLQIIA
KNVSQSSLLRLIVPFKDILASTKSLKMTKKVEECLHNVALGLAANSGLSIEPLLIFIHGV
ISLSIPELRLPVQRVQQDPNMTASGRPMRTDSLVLAPVPKRKVAAAALPSVTGASKSAYI
INSHIVIEFGLLIFSLILKREKCHENASTKVIPMLDPIVPIVYNNLNDPHSKLVALSLRC
ICTLLRIPLPSINEYAPKMSTSIFGLLHRYAGSTAGENLEMVQTAFKAISILVRHVTSHS
IDTDQLRVLLVYCEQALFDPKQQSIAFGMLKAIVKRKMTLEELPDVMLRVAELSVKAEAV
PVRVQSRKVVLQYMVDYPLGKKLMRYVEFFLKQLDYEKESGRLSAIEFLVSVFNSFPKNF
LSQQSTFFLVTMSPYLINETSSSCVKAVAAAIRILIERLNTPTATTLFEICLAWLRGQNT
SHKRLAVQLCGIFVAAEKSGFEFRMKEILPEIVKLLDQTHSDSDGREDRESDLLLIQTLY
TIIKMTQHCAAGFQSEDNKDFSEQIWEKIIHHLSHPHLWIRTLSSRLVGTLLGWHKPEEL
AAYVVKPSEEVTRSYFFCGEISKRLRSLARDLVMQLQSEMLDNQLADQVIKNLVFIGKVA
NRIPVSEESEEESKIKAPTLAWLTGKLRREVNAEVVLHPKTPTKRLAVFKWMAAVAVDLN
QVAGKEGLETVLKFFVSPLTRDINDDGSPKEVKDLAHEVSELIKGLVGTEMYSEAVVAAN
KVLAVRRRDRQAVRKADSVIRPEKAAQLRIKKHFAKRVAKKVKIARLKGVKPKLKNLAMR
KMTIKK
NT seq
8121 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaacaaaacctacaaaacacaaggaagacaatacgttcaagtttaaaacattt
gctgagcggctctcttcagtgaatgttgatgtcatccatcgagtcaacctcaaacgaaat
gttgtccctgatgagacagagactttctttttcgaagctttagaaaaatggacagatcta
aactgtacagaaggatttaccattttctgtaagcgtgtaggaagagatgttcaaagctta
ggtcaacttcttttacatgaagatagaatcctaaatttgctcttggagcatattgacaaa
gaaaatgttctttttctggagccaattttagacttggtggttgctgttgccaaagatcta
caatcagatttctacccaaagtttccaaactttttcagcaagttaattgatcttcttcaa
gtacgagaacctgaaataacagagtggactttcaccgctctagcttatttgtacaagaac
ttgtggagattgttaattaaagacattgacaatgtatatgggcttctacttccacttttg
gcctccaatcaaccagaacatgttcagcagtttgccactgaaagcttcgcgtttattgga
cgaaaagttggagaccgagctggatttgtggaattaattttcacaaagcttcgagaaaat
gctggtgacagcttgggtgttggtcaacttttgttccaaattgtaaagggtataaagaat
cagttccacacttcattggaattgttccttcccatatacttcaaatctctactttctatt
gaacaaaatgtttgcaatgatcctgttttcattgctgtcaatcattgcttccttctaatg
gcaaggcacacttctcagcaacactgtgccagagtctggattcttcttttggcagcgatt
gatagttctaagagaccgggagctctcggtttgttacttctattccagcaatgggtagaa
tttagagaaggtgaacttattacagacacgcttgctgtatcgaagactcttgtggctctc
ttgaacgaccaacaactggatgaaacagagcaacaaagcgtgtcggtaactgttgcggaa
ctaatgaagtcaactaaggtcagtttaccaattgaacagacatcgaaacttggtcatctg
gttttcgcttatcattggaaacctgaaattgttttggaatttactctacaagtgtcgacg
tacggcttcttcgaatcccatttgctcccacactacatcactttttgtcactcacttggc
aagaaagatcgagaaacacgctcgcagttattgaaaaacctggcaagtttgatctccatc
aaagcttccctcccgaaaaatggcaacgacatggacaacttcaagatctacccgctcgaa
tttacttttgccatgagaaaatcatcggatacggacagtgttcctcatcttattcaaact
attctagaggaaaatttagaagtaatgatcaacgaagattttcaaacgtatgttaatgcg
ctggtctgtcttccccatcttcgaccgattgattccgtcaaagctatcaaagttttaaaa
aagattgtcaaagagatagccgatacggttgaaagcaatgctgaagaaccccatactaaa
cgggcgaaaactacccgcccagtggattattccgagagactgggtctggtattgagtctt
gccattctaggcatccgacatttttcatcgaatttggaaaaggatgtcccttggcagatg
atcaaatccgccttcctcaacgagactatgtctactagcttattttatctacgtgcagca
gatttttatttaacaagccttcacgaaagcggcaacgaagatactttttcgttgcaagtc
ctttgccaggtctatgacgtcattggccaaaatcttggatctccctatcacgaggttagg
ttgctgacgcttcacatcttgtcgctcttttcgccccctatggcagctcccccggaaaat
gtaaatcccacaccggttttccaaacctgtctcaatgcagaattgatttctgccggcgtg
cgagaacagcgtgaaaaacttgtacatctacaaaatctggaggccgaacgtgtgatttac
agcttgcctgctggtggtcacttcgcgaaagctcccttacaatacttgttgagccaactt
tacatcaacttccgaccactctgggagccggtccttaaactcgtagagtctcacgctttc
aacatggattctcccaagttttggtctgtgtatttacctttcttggagcgagttcgtcga
tgccaggcagaagaaattcgtgatccctcggctcaaatggaatatttgaatcttgcagtt
accgttgagcgaattgatttcaccaatactcgatcactggcatggtctggtctttcaaga
atcgggaacgtggccgaaaaagagcacgcgataatcgtccctttgttcttgcatttttgg
aacactgaatattgtgtaaacgatgggaacatcgcgcaaacccaagatcttactgatgga
gttcaagtggaatcaactaaaggagaacgaggcaatattattaagctactgtcttcgtat
ctctccgttctggcgtcatttcagcaacctcagaatatgactagtgaaccggaagtaacc
aaaattcttctccgtttgctttcccatcgttcgggtgacattcaaaagcaagccctggac
tgtttggtggcgtacggatatccctacttgatgccatacaaggacaatttataccgagtg
cttgacgacaaatcgtttcgaaatgaaattacttctttttctatcgacactctcagttcg
tccatcaagtccgaacatcgtgccggtttgacatccattctcatcaggattttatatggt
aaaatgatgttcaaagctggatccggatcaactggtaaagataacatccaactcagacaa
gctgttattcttcgctacgttgccggcctcgccgattctgaaatcgatgtattcctcgat
ttggctttccaactgtttagtgagtttacgcgaacggaagacgtctatcagcatgtcgtc
cgaacgatgcgagaagctgatcccaaacttgcactgcccctcaaacgaattcaaggagct
ctagttcttatgggcaccattttctccaaattgggaaatattatgaaatccactttgccg
aaactgctacatatgttactgaacatcagtgctcacattatgggaatgctcgataaacga
aatgaagtggaagcgaggcatatcgcacagttgaagaatttacgaacgattggatggcag
cgaatcacacagtttttcaagaagtttgaacggtatccttggtcatcagccgaaattgaa
gccgttttccacgtgtatatttggcctcaactagaaatgttgtccgatcaagctttttct
ggtgttactccaatgcttcgcttatttcaagtgtggtctgaaaatccgagatactttgtt
ctcttcggtaaagctcacccagaacgcccggaacttaccgttctacaacctatgctgaca
ttactttctggtggcaaagcggtgaccttggtttgctcctttcttatggacatggtcgac
aagttggtcacaacagcggattatgggacagtggttgaagaggacgacgatgaaaaggaa
gagccaatttacattaaacccgctttttcagtggaatgggattctccgttggattcgatg
gtggtggatgacgtcggcgaggagacgaagcctaatcacggttcgaagctccttattccc
cacatgtctttagtgctggtttatctccgcaagtttatcactcacgggttaaatggaaga
gatttgaatgtacttatgcgaatatccgaatacgtcaatgaaccccaactgagcactgag
ctcgcacggatgattattccagctatcaaagtcgccgtaaatcgcaatcgcaacagttca
aatcttgaggagaaacttcttcgatatctgggtactttagctaatttagtaaagactgcc
aacaacccacaggagtttataggggcgttatctgcgttatttgggactatcgaaggaaga
aatgtccgacacagtttgtgtaaagttatggaagtcatatgtgtacgagattcttcacaa
ggatctcttggtgaattggtgtcgtcgatgaataagtgggatcctcaacgtcttgaagag
cccgattacacgcatcgtctgaaaacacacaaagaaatcaatgttgttctcgagactgga
acaccctccttcgaatgggcagccttggcattgtataattcgttcaacttcatcagaacg
gaacctgattcctcgttgatcgacaatgcttcgttgactcttcaaattatgacaagtgcc
tttgaccgttggaattttggcaagactttactgaatgagcattttatacctcagctgcgt
ttactcatccgctcccccaaggaaacagtgcgacacgaaggtgtctcaatcttaagcaaa
gcggtttcaaattgcggttcaatgaatgcatcgcttaatagtttgcgaaaaattaggaaa
gagggagatgttgaagttgattttttcgaaaactgtcgtcatttgcagactcatcgacgc
tcacgtgccttacttagattgtcaggtcttttaaaaaaagataagacgtgcataaatggc
gaaaccatcactcagtatcttttaccgttggcttcctgttatctcttcaatgaagaatat
gccaagcataatcacttgatagatgctgcacttgagtgtctgcaggccatcgctcggtgt
ctttcttggcagaattatgaaagtcttttgcgcttttatttgtccaacatgactcgccaa
attgaataccagaaacaagctgttaaagctgttgttgcgattctaaacgcgtttcatttt
gacttgaagaactcaaaatttaaatcctactatgctgccaaagctatagccgcccaaaca
tctgaagttcaagcttctgttcccgaagtgcctaatgttcctgacacttcagaagaatct
tccgttgctgctgttgtcgaagatggcgtggtgccaccgattattgagaatgagagcgcc
gatcacccagatgctgaactaccggagatggtaccagaagcagaagaaaaatcttcgctc
aatgacgctatggcaacaaaaattcattcagtcatttcacaacaacttcttcctgaactg
aatgccattctcaccgcacgttcaactcgagagaagcaacacaagactgttaaggatcac
tacccagaggatgatgaaatcttgcgagttccgattgcattggcccttgttaatctccta
aaaaatcttccaccaggaacgttggaacgtagtttgcctggaatgttttcaaaggtttgt
accttcctcaaatcacgctgcaatagtgtgcgtgaaaccgcccgcgaaactttgatcgag
atggtgatttcccttggcccggaatgcctcagtgcgctcatggatgctgcctatcccatt
cttcaacggggatatcaagttcacgtttatattttcacaatgcacgctatactggccaag
ttgggtgaaataggccaattgaaagctggatctctagatgcagttgtatacccactaaca
gagttgtgtaaaaaagaactctatggtgacacggcagatgaaaaagaagttgataagatt
gtcagcaagcttaaagaagccaaaggagtgaaagcctttaacacactgcagatcattgcg
aagaacgtctctcagtcatctcttttgcgattgattgtccctttcaaagacatcctagct
tcgacaaagtcgttgaaaatgaccaaaaaggtcgaggaatgccttcacaatgttgcctta
gggcttgctgctaattccgggctgtcgattgagccattgctaatttttattcatggtgtg
atttcattgtctatcccggagttgagactcccagtccaacgtgtgcaacaagatccaaat
atgacggcttcgggtcgacctatgagaacagattcactagtacttgctcctgttcctaaa
agaaaagttgctgctgcggcgcttccgtccgtcactggagcgtcaaagtctgcttacata
atcaacagccacattgtgattgaattcggccttctcatcttcagtctcatcttgaaacgc
gaaaaatgccatgaaaacgccagcaccaaagtcatccccatgcttgaccccattgtgcca
atagtctacaataacctaaatgaccctcattccaagctggtggcgttatctttgagatgt
atttgcactttgctccggataccactacctagcataaacgaatatgcgcccaagatgtct
acatctatttttggtcttctacataggtatgctggtagcacagcaggtgaaaatttagaa
atggtgcaaaccgcgttcaaggcgatttccatcttggttcgacacgttacaagccacagc
attgatacagatcagttgagagttttactggtgtattgtgaacaggccttgttcgacccc
aaacagcagtcgattgcgtttggtatgttgaaggcaattgtgaagaggaaaatgactcta
gaagaattgcctgatgtgatgttacgagtcgctgagcttagcgtcaaagctgaagccgta
cccgtccgtgtacaaagtcgaaaagttgttttgcagtacatggttgactatccacttgga
aaaaagttgatgcgttatgtggagttcttcctcaaacaactggactacgaaaaagaatct
ggaagattatctgccattgagttcctggtctccgtcttcaattctttcccgaaaaatttt
ctcagtcaacaaagcacattctttttggtcaccatgagtccatacttgataaacgaaacc
tcatccagttgtgttaaagctgtggctgctgcaatcaggattctgattgagaggcttaat
actcccactgcaaccacgctcttcgagatttgccttgcttggctaagaggtcaaaacact
tcgcacaaacgcttagccgttcagctttgtggtatatttgtggcagctgaaaagtctggc
tttgaattccgcatgaaagagatcctaccggaaatagttaaactgttggatcaaacccac
agcgattctgatggtcgggaagatcgtgaatctgacctgctactcatccagacgctttac
acaattatcaaaatgactcaacattgcgctgccggcttccaaagtgaagacaacaaagat
ttttcagaacaaatatgggaaaagatcattcaccatttatcgcatcctcatctttggatc
cgcacgctgagctccagactcgtaggcactttactcggatggcataagcctgaagaatta
gccgcatacgtagtgaaaccttctgaagaagtgactcgtagttattttttctgtggcgaa
atatccaaacgacttcgatcacttgcaagagatttagttatgcaactgcagtccgagatg
ctagacaatcagttggcagatcaagtcatcaagaacttggtgttcatcggcaaagttgca
aaccgcattccagtatcggaagaatccgaagaagaatccaagatcaaggctccaacgctt
gcttggttgaccggtaaattgagacgagaagttaacgctgaagttgttcttcatcccaaa
acacctaccaagcgtcttgccgtgttcaaatggatggcggctgtagctgtggacttgaat
caagttgctggaaaagaaggacttgagacggtcttaaagtttttcgtttcgccacttacg
cgcgacatcaacgacgatggatcccctaaggaagtcaaggacttagcgcatgaagtttca
gagcttataaaaggattggttggtacggaaatgtatagtgaagccgtggtggctgctaac
aaagttttggctgttcgccgaagagataggcaggcagtccgcaaggcggatagcgtgatt
cgtcccgagaaggcggctcaattgcgcatcaagaagcattttgccaagagggttgcaaag
aaagtcaagattgctagactgaagggtgtcaaacctaaactaaagaatttggcgatgaga
aaaatgaccataaaaaaataa
DBGET
integrated database retrieval system
