Daphnia pulicaria: 124348849
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Entry
124348849 CDS
T08670
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
dpz
Daphnia pulicaria
Pathway
dpz04140
Autophagy - animal
dpz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124348849
04148 Efferocytosis
124348849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpz04131
]
124348849
Membrane trafficking [BR:
dpz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124348849
Hops complex
124348849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
TPR_Vps41
Beta-prop_EML_2
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING-like
zf-RING_5
NPF
zf-ANAPC11
DUF7724
Motif
Other DBs
NCBI-GeneID:
124348849
NCBI-ProteinID:
XP_046655145
LinkDB
All DBs
Position
7:18628105..18632972
Genome browser
AA seq
1088 aa
AA seq
DB search
MAFFQWRRFNFFELLKETDSGNLERSFKDVTITSSSSGRGHIILGDNLGLVHLFDRQYQR
ESFKAYNVNTSHVLQLKQSPFLGTVGEDDPGVNPVIKIWNLEKKDIHGCPVCVHLVRALP
GNRPVPVTAFTIDEQMHLMAAGFADGSVVLYRGDLSRERHSKQKFLQPGTSLIAGLSLRT
NQKLSYLYVATTTAVLTYTIASKDKEKYAELDRVGCSLGCVAFADSKQGQHFMIARNDAV
YCYSVEGRGPCYAFEGEKLDLHWFRGYLVIVSKVVGKGDVDSDKTTVTIFDVNNKFIAFT
APIANAYRVISEWGSLLVLTKDKKVHQLMEKDLHTKLDILFKKNLYDVAIRVAKSQQYDI
EGLVEIFKLYGDHLYAKGNHSGAMEQYLKTIGRLEPSYVIKKFLDAQRIHQLTAYLQELH
KQGLASEDHTTLLLNCYTKLRDTERLNQFLNTKDQRSEFDVETAIRVCRQAGYFEQALRL
SQDREKHEWHLKILLEDLSDYRQALEYIKKLPPDLAKENLLEYGNALVEELPDDTTKLLL
ELCCNKSSTSEVCDPQEFLLLFINHNEKLVEFLENVLQVYPNSQSSLHFALLEQYLLMWT
KNIADPELEKKITLLLQHSSVLSAADRALFLCQTHKFRPGILFIFEKTKLYGEILHFYAS
ENNFENVIATCRRFGQQEPSLWVKALTLSTSNDKVTPGCLAEILASIEKLKLLPALRVIE
MLCRSPSATLGLARDYLIRTLQSDQSNISEDERLIHQYRQETEAVREKIKDIKTSALVFQ
GSKCNVCNQPLELPSVHFLCLHSFHQHCFDSYADNENECPACHTENKRILDIVRAQEQSK
DLHEAFHGQLEKADDPFTVLADYFGRGVFNSLPSWESAISGHQGVRSELPSVSWGPQNAG
PGSEAKLRKNEGKNTLSSTGFANEGRMRLQESASVRPTRDVTEGRLRNAEVIGAAERVAS
SAAATTTSEARHRLQEGTTKKNYQTASVEIPRQTVASQSATSVPNYVGTRAVCVPAVSDL
STSLRKPEVNKLPPSKTCANKISVGPENPFKDDNYDETKNPFADEEPTNPFGDDDDDDYN
DSLNPFAE
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggctttctttcaatggagaagattcaatttttttgagctacttaaggaaacagacagt
ggtaacttggaaaggtcattcaaggatgtgacaatcacctctagttccagtggaagagga
cacatcattcttggggataacttgggtctggttcatctctttgacaggcaatatcaaagg
gaatcctttaaagcttataatgtaaataccagtcatgtgcttcaactgaaacaatcacca
ttccttggaacagttggtgaagatgatccaggagtcaatccagtaatcaaaatttggaat
ttggaaaagaaagatattcatggttgcccagtatgtgttcatctagttcgtgctctaccg
ggcaatcgaccagttccagtcacagcattcacaattgatgaacaaatgcatttgatggca
gctggttttgcggatggctcagtagtcctctacagaggagacttaagtcgtgaacgtcac
agcaaacagaaatttcttcagcctggaacaagtcttatagctggactttcattgcgaact
aatcagaagttatcgtacttgtacgttgcaacgacaacagctgtcctaacctacaccatc
gcttccaaggacaaggagaagtatgcagaactcgatcgtgtgggctgttccctaggatgt
gttgcttttgctgactcaaaacaagggcaacatttcatgattgctcgaaacgatgctgtt
tactgttattcagtggaaggaagagggccctgttatgcatttgaaggagagaaacttgac
ctgcattggtttcgtggctatttggtcatcgtatctaaagttgttggaaaaggggatgta
gacagcgacaagacaactgttaccatctttgacgtcaacaacaagtttattgcatttaca
gcacctattgctaatgcttatcgagtcatttcagaatggggatcacttcttgttcttacc
aaggataaaaaggttcatcagttaatggaaaaagacttgcacaccaagctagacattctg
ttcaaaaagaatctttatgatgttgccatcagagttgccaagagccaacaatatgatatt
gaaggccttgtggagatctttaaattatatggtgatcacttgtacgccaaggggaatcac
tccggagcaatggaacagtatttgaaaacgataggtcgcttggaaccatcgtacgtcatt
aaaaaattcctggacgctcagcgcattcatcagttaacagcctaccttcaagaattacat
aaacaaggcctcgctagtgaagatcacacgacgctacttttaaattgctacaccaagctg
cgggatacggaacgattaaaccagttcttgaatactaaagatcaacgaagtgaattcgac
gtcgaaactgctattcgggtctgtcgacaggctggttatttcgagcaggcattgcgtctt
tcccaagaccgagaaaagcacgagtggcatcttaaaatacttttagaagacctgtctgat
taccgacaagcgctggaatacataaaaaaattaccaccagatttagccaaagaaaatttg
ctagagtatggcaatgcacttgtcgaagagctccccgatgacactacaaaactattactg
gagttgtgttgcaataagagcagcaccagcgaagtctgtgacccccaagaatttttattg
cttttcatcaatcacaacgaaaaattggttgaatttctggaaaacgtactgcaggtttat
cccaattcacaaagttctcttcattttgcactcctcgaacaataccttctgatgtggact
aagaatattgccgatccggaattggagaaaaagatcacacttctactgcagcattcttct
gttttgagtgcggcagatcgagctctcttcctttgccaaactcacaagttccgaccaggg
attcttttcatatttgaaaaaactaaactctatggagaaattctccatttctacgcaagc
gaaaataactttgaaaatgttattgcaacctgtagaagatttggtcagcaagagccatca
ttatgggtaaaagcattgacattatcaacttcaaacgacaaagtcacacctggttgcttg
gcagaaattttggcatctatagagaaacttaaacttctacctgccctcagggtgattgaa
atgctttgtcgctcccctagcgctactttgggtctcgcccgagattacttgattcgtact
ctgcaatcggatcagtcgaacattagtgaagatgagaggctcattcaccagtatcgccaa
gaaactgaagctgtgcgtgaaaaaattaaggacataaaaacaagcgctctagtgtttcaa
ggttctaaatgtaacgtttgcaatcagccattggaactaccttcggtgcatttcctttgt
ttgcactcatttcatcagcattgcttcgatagttatgcagacaacgaaaacgaatgccca
gcatgtcacacagaaaataaaaggattttggatatcgttcgggcgcaggaacaaagcaaa
gatcttcacgaagcctttcatggacaattggaaaaagcagatgaccctttcaccgtactt
gccgattactttggtcgtggggtgttcaatagtttgccatcctgggagtcagccatttcc
ggtcaccaaggagttcgcagtgaattgccatccgtgtcctggggtcctcagaatgctggt
cccggttctgaagcaaagctgcgtaagaatgaaggaaagaacactttaagttctacagga
ttcgcaaatgaaggtcgtatgagattgcaggaaagtgcgtcggttcggcctactagagat
gtgactgaaggtcgattgcgaaatgctgaagtcattggagcagcggaacgagttgcatcg
agcgcagcggcaaccacaacctccgaagcaagacaccgacttcaggaaggaaccacaaag
aaaaattatcaaactgcgtccgttgaaattccccgtcaaacggtggcttcgcagtcagcc
acgagtgtaccaaactatgtaggaacgagagcagtttgtgttcctgcagtatctgacctc
agtacgtcactcagaaaaccggaggttaacaaattacctccaagtaaaacttgcgcgaat
aaaatttcagttggaccggaaaatccgtttaaggatgataattatgacgaaacaaaaaat
ccttttgcggatgaggaacctaccaatcctttcggtgacgacgacgacgatgattataat
gacagtctaaatccttttgctgaatga
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