Daphnia pulicaria: 124348880
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Entry
124348880 CDS
T08670
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124348880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124348880
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124348880
Spliceosome [BR:
dpz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124348880
Complex B
124348880
Complex C
U2 SnRNP specific factors
124348880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
MscL
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124348880
NCBI-ProteinID:
XP_046655204
LinkDB
All DBs
Position
7:17289973..17293268
Genome browser
AA seq
805 aa
AA seq
DB search
MNSGRGGSRFSGFSVGPRPRPNVNKSSGGLHAVPPPPSMQRPGNANTIPLAPRFSRPGLP
GSSSFSSSNRFNPAPGAGPISVEIVSPVSVSKQGYSTLNAISQSAINTTYGVPTNRPKTE
DDYFDEDDEEPSSNEPLYQPGPDSPNFKANAESDDEEDPLDAFMNDLNKKVKKEEVKVPQ
KEESNAKGKGKAVRHDIEEEDDEESYYRYIKENPLAGLQGDDSDSEQIEYDEDGIPIKLG
KKHIDPLPPIDHSSITYSPFEKNFYEEHEEIKNLPLNQANELRETLGLKVSGISIPKPVC
SFAHFNFDEKLMNVIRKSEFTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIV
HILDQPDLKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDL
EQGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQ
TLLFSATFKKRIEKLARDVLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLITRLVE
FMASGSVLIFVTKKANAEELSASLKSREVSVALLHGDMDQVDRNQVISSFKKKEMDILVA
TDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKEFAGHLV
RNLEGASQVVSEPLMDLAMQSAWFRKSRFKGGQGRKPNVGGRGLGYSDKSLTGANKTLTG
ANAIKPSFQSGPSSYSKPTTPGPAAAAGPSGGRLAAMKAAFQSQYKSQFCSSSDDKPAAP
VTSSSTPAAESSGDRPVKKKSRWDD
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagggcgtggtggtagtcgattctctggtttcagtgttggtccaagacctaga
ccgaatgtaaacaaatctagtggcggtcttcatgcagttcccccgccaccgtcgatgcaa
agaccaggcaatgcaaacactatacctctagccccaagattttctcgtcccggtttacct
ggtagtagcagtttttccagttctaaccgatttaatcctgcacctggggctggtcccatc
agtgttgagattgtatcaccagtgtcagttagtaagcagggctatagtactctaaacgca
ataagccaaagtgcgattaatacaacatatggtgtacccaccaataggccgaaaacagaa
gacgattactttgatgaagatgatgaagaaccctcttcaaatgaacctctatatcaacca
ggacctgattcacctaactttaaagcaaatgctgaatctgatgatgaagaagacccttta
gatgcctttatgaatgatctgaacaagaaagttaaaaaagaagaagttaaagttccccaa
aaagaagaatcaaacgcaaaagggaaaggcaaagcagtacgccatgatatcgaagaggaa
gatgatgaagaatcatattatcggtatattaaagaaaatccactggctggattgcaagga
gatgattcagattcagagcaaattgaatatgatgaagatggaattccaattaaacttgga
aaaaaacacattgaccctctcccccctatcgatcactcttctattacctactctccattc
gaaaagaatttctatgaagagcatgaggagatcaaaaacttacctcttaaccaagccaat
gaactgagagaaacacttggtttgaaagtgagtgggatttctatacccaaaccagtttgc
agttttgcccatttcaattttgacgagaagctcatgaacgttattcgcaaatctgagttt
acgaacccgactcctatccagtctcaagcaatcccagcagcgttatcaggacgagatgtt
attggtatagctcaaactggtagcggaaaaacggccgctttcctctggccaatgatcgtt
catatattggatcaaccggatctgaaaccaggtgatggacccattggtcttattttagca
ccgactcgcgagctcagtcaacaaatctacaccgaggcaaagaagttttgcaaagttttt
ggtattagtgttgtttgctgttatggtggtggttcgaaatgggaacagtcgaaagattta
gaacaaggggcagaaatcgttgtggctactcctggtcgaatgattgacttggttaaaatt
aaagcaacgaatttacaacgtgtcacatttttggttttggacgaagcagatcgaatgttt
gacatgggatttgaaccccaagtgcgatctatttgcaatcacgctcgacctgaacgacaa
actcttcttttcagtgccacatttaaaaaaagaattgaaaaactagcacgcgatgtgctg
tcggatccaattcgaattgttcagggtgatgtcggggaagccaatcaagacgttactcaa
gtgatagaagtgatagctcctacagccaagtatagctggctgattacacgtttagtcgag
tttatggcctcaggttccgtattgattttcgtgactaaaaaggcaaatgccgaggagctt
tctgccagtctaaaatctagagaagtctccgttgccctactgcatggtgacatggatcaa
gtcgatcgtaatcaagtcattagctcgttcaaaaagaaagagatggatattctcgtagcc
accgatgtggctgctcgcggtcttgacattcctcacatacggacagtcgtcaactacgac
attgctcgcgatattgatacgcatactcacaggatcggaagaacaggtcgtgctggtgaa
aaaggcacagcttatactttagttactcccgcagacaaagaatttgcgggtcatttggtc
aggaatttggaaggagcaagtcaagttgtgtcagaacctttgatggatcttgctatgcaa
agtgcatggtttcgcaaatctcgtttcaagggtggacaaggtcggaagccgaacgttggg
ggaagaggtttaggatactcggacaaatctctcactggagccaataaaacgctaactggg
gccaatgcaattaaaccttcttttcagagtggacctagttcatactcgaaacctactaca
ccgggaccagccgccgcagctggaccaagtggaggtcgtttggctgcgatgaaagctgct
tttcaatctcaatataaatcgcagttctgcagcagctctgatgataaaccagcagcacct
gtgacttctagttcgactccagccgctgaaagcagtggagaccgtcccgtgaagaaaaag
agcagatgggacgattga
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