KEGG   Daphnia pulicaria: 124348946
Entry
124348946         CDS       T08670                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
dpz  Daphnia pulicaria
Pathway
dpz03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:dpz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124348946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpz03021]
    124348946
   03036 Chromosome and associated proteins [BR:dpz03036]
    124348946
Transcription machinery [BR:dpz03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124348946
   Coactivators
    SAGA/TFTC/STAGA complex
     124348946
Chromosome and associated proteins [BR:dpz03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     124348946
    STAGA complex
     124348946
    TFTC complex
     124348946
    SAGA complex
     124348946
    SLIK complex
     124348946
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EML WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_TEP1_C WDR90_beta-prop_4th TFIID_NTD2 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF4 WD_LRWD1 PROPPIN Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st bpX2
Other DBs
NCBI-GeneID: 124348946
NCBI-ProteinID: XP_046655317
LinkDB
Position
7:complement(16818583..16820880)
AA seq 556 aa
MKTSKHDGIITAAGIHLSRRNFTDSDFLKKNKLKLKQSTEQFENSATWPQRIISVQNFNL
TEQEAELQFLKLKAWVDSLEDNIKIELDEILFPAFISLYRRMNVSGNMIGARGFYTRNQS
NFLKVPELRKMAEKFCSENNSHFILELSSESFEVLHSYIGSNDHPLLQQLLNTTLEVNII
KSKIDTSSANQANPKTIVDSSNMEEVHGLLAAISRLKEVPPTAPLLKLYSIDTGQRKMSA
ASASPCENYLSCGFQDSSVAIWDVKKLRSPSKSDLTRLDLSEACAISIYHPATSAPLPTE
SDSSVSVCLGHSGSVYATQFTPTNSHVLSCSDDTTLRLWEISSMENVFVYRGHTYPVWDV
NISQNGQFFASASQDRTAKIWMFDRTYPLRILAGHTADVDCVTFHPNGLYLATGSADSCV
RMWNVAEGKTVRILVGHCGTVLSVAFSPCGTLLASAGEDHRVIVWDVAAGRILHDYNGHQ
YVVHGLVWISEHVLCSYSADGNIRVWNVAHPSTSSLTPASQLQQQELASYQVASPAKIVH
LGRGNRDSLVCIAASD
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgaaaacctccaaacatgatggaattataactgctgccgggatacacctttctaggcga
aatttcactgactcagattttctcaaaaagaacaaattgaaattgaaacagagcactgaa
cagttcgaaaattcagcaacatggcctcaaaggatcatttcagttcaaaatttcaaccta
actgagcaggaagctgagcttcagtttttaaagttgaaagcatgggtggactcattggaa
gataacatcaaaattgaattggatgaaattctctttcctgcatttatttccttgtacaga
agaatgaatgttagcggtaacatgattggggctagaggattttatactcgaaaccagtct
aactttttaaaagtgcctgaactaagaaaaatggctgaaaaattttgttctgaaaacaat
agccatttcattctggaactgtcaagtgaatcctttgaagtgttgcatagttacattggg
agcaatgatcacccactattgcaacagctactcaacaccaccctggaggtaaacatcatc
aaatcgaaaattgataccagcagtgctaatcaagcaaatccaaaaaccattgttgactcg
tcaaatatggaagaagtgcacggtttgttggccgccatatctcgattgaaagaagttcct
ccgactgctcccttgctgaaattgtactctatcgacacggggcaaagaaaaatgagtgca
gcttcggcatcaccttgtgaaaactatctctcttgtggatttcaagattcctccgttgct
atctgggatgttaaaaaacttcggtcaccctccaaatctgatctcactcgattagacctc
tcggaagcctgcgccatcagcatttatcacccagcaacttctgcaccgcttccaacagaa
tcggactcttctgtctcagtttgcttggggcattccggttcagtctatgccacacagttt
acccctactaatagccacgtgctaagttgtagtgacgatacaactctaaggctttgggag
atctcttccatggaaaatgtgtttgtataccgaggacacacttaccctgtgtgggacgtg
aacatatctcaaaatggacaatttttcgcttctgcatcgcaagatcgaacagccaaaatc
tggatgtttgatcgtacataccctttacgaattctagccggtcatactgccgatgttgac
tgtgtgaccttccatccaaatgggttgtatttggccacaggctcagctgatagttgtgtt
cgtatgtggaatgttgctgaaggaaaaactgttcgaatcttagttggccattgcggcaca
gtattatccgttgctttcagcccttgtggaacgttgttggcatcagctggtgaagaccat
cgtgtgatagtttgggatgttgcagctgggcgtattcttcatgattataatggccatcaa
tatgtcgttcacggattggtttggatttccgaacatgttctctgttcttacagtgcagat
ggtaacattcgcgtgtggaatgtcgcacatccgtccacgtccagtttgacaccagcgtca
caactacaacagcaagagttagcttcttaccaggttgcgtcacccgcgaaaattgtccat
cttggtcgaggtaaccgggatagtttggtctgcatcgccgcctccgattaa

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