Daphnia pulicaria: 124349429
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Entry
124349429 CDS
T08670
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124349429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124349429
03012 Translation factors [BR:
dpz03012
]
124349429
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124349429
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124349429
Translation factors [BR:
dpz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124349429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
AAA_16
RsgA_GTPase
ABC_tran
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
124349429
NCBI-ProteinID:
XP_046655982
LinkDB
All DBs
Position
7:complement(3111936..3115415)
Genome browser
AA seq
989 aa
AA seq
DB search
MEMKHIAAKDISPVASSDHLGRRSLPKESGRESTLGNLKIIRQNVRKKKEEKPKKQLDGK
AKGLWDAAKTKTNQKENKKSMIEVSQPANQKFEGFFENCVPVTDVRSDADWRIKYETLND
SSFKRKFLEILQGNEVSTASAENKNEMNSVLASTPKLDEKLLEEFLLKDSNEEFQQMLAS
RVTLPAWSRKEDVLKAVRDNQVVVICGETGCGKTTQIGQFLLDEAIETGSGSTFHAICTQ
PRRLAAISVARRVAEERNETCGDLTSSVGYQIRLERLYPRERGSILFCTTGILVQLLISD
PLLENYSHILLDEVHERDLLTDFILTIVRDLLPKRPKLRVILMSATINSNLLSTYFNNCP
VLNISGRNFPVQVFYLEDILSELDYRFRSTRSKSGSDAQSNQLDLEYNQLMIPLIEEMEA
KHSYPLHVFKSLRKRESEEAPEILIMALLKHICAREADGAILIFFPGWEQIKSLNKLLLN
DRQFSSRKFLIFTLHSMLPTFNQRQVFDKPPRGVRKLILSTNIAETSLTIDDVVYVIDCG
KAKLPNFDPQTKLNTLNSEWITLANGSQRKGRAGRTKPGICYKLYSRGRESTFPPHPIPE
IKRTRLEELILRVKILKLGRVEDFLRIVPEPPDDCTVKISLELLHELGALDDAECLTPLG
FHLAQLPTDPRTGKLILLGAIFGCLEPMLSIAAALNFKDPFVVPLHQEENYRKRKKVLGD
KLFSDHLLIAKVMRQFRAAQNEGYATAKAYCIENFLSTSTMSMLSNMMDQFCRDLHERQF
VTSVSLSDPAANVNSKNDCLVLAVLCAGLFPNVANVAVPSRNLPKRNSSKSPTSAFKVMT
PEDGPVLIHPRSINYNTDFAKSTWLCYYDKVKSTSVYLHDCSVVPPLAVLFFGGEQLLGK
KNGKINSNGFRFKWDSLALEKTQSLRLCWENYLCHRVSHPGATDWSPDSMDSALLRAIIQ
FTTATSVSLDEETGFLMLTKEEAGYSRVW
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaaacatattgcagcaaaagacattagtccagtggcttcttctgatcatctg
ggaagaagatcattgccaaaagaaagtgggagagagagcacactaggaaacttgaaaatc
ataagacagaatgtcaggaagaaaaaagaagaaaaacctaagaaacagcttgatggaaaa
gccaaaggtttgtgggatgctgccaaaacaaaaactaaccaaaaggaaaataagaaatca
atgatagaagtgtcccagccagcaaatcaaaagtttgagggattcttcgaaaactgtgta
ccagtcacagatgtaaggagtgatgcagattggagaattaaatatgaaacattaaacgac
agttcatttaaaagaaaattcctggaaattctgcaagggaatgaagtttctactgcaagt
gctgaaaacaaaaatgagatgaatagtgtccttgccagtacccctaaactggatgaaaag
ctgttggaagaattcttgttaaaagactcgaatgaagaatttcaacagatgctggcatca
agagtaacactacctgcttggagccgaaaagaagatgttctgaaagctgtgagagacaat
caagttgtagttatctgtggtgaaactgggtgtggaaaaaccactcagattggacaattc
ctgctagacgaggccattgaaacaggaagtggatcaacttttcacgccatctgtactcag
ccgaggagattggcagcgatatctgttgctcgtcgagttgctgaagaacgcaatgaaacc
tgtggcgatttaacaagctccgttggctatcagatacgtctggaacgcctttaccctcga
gaaagaggatctattctattctgcacgactggaattttagtccagcttctgatatccgat
ccattgttagaaaactactcccacatcttactagatgaagtccacgaaagagacttattg
accgacttcattctgaccattgtacgtgatctacttcccaagcgtcccaaacttcgcgtg
attcttatgagtgccaccattaattcgaaccttttgtcaacgtactttaataattgtcca
gtgctcaatatttccggcaggaatttcccagtgcaagttttttacttggaagatattctc
agcgaattagactatcgatttcgttctactcgcagcaaaagtggatcggatgctcaatca
aatcaattagaccttgaatacaatcaacttatgatcccattgatagaagaaatggaggcc
aaacacagctacccgctccacgtgtttaaatcattacggaagcgcgaatctgaagaggct
cctgaaatattgatcatggcgctgctcaaacatatttgtgcgcgggaagctgacggagcg
atcctgatctttttccctggctgggagcagataaaaagtttgaacaaactgttgcttaac
gaccgacaattctccagcagaaagttcttgatctttaccctgcactccatgttgcctacc
tttaaccagcgccaggtcttcgataagccaccccgtggagttagaaaattaattctatcc
accaatattgccgaaacaagccttacaatcgacgatgtcgtgtatgttatcgattgcgga
aaagctaaactaccaaattttgatccgcaaacgaaattgaatacgctcaattccgaatgg
attactttggctaacggttcccaacgcaaaggacgcgctggtcgaactaaaccaggaatc
tgctataaactatacagccgtggacgagagtcgactttccctcctcatcctataccagaa
atcaagaggacgcggttagaagagctcatactacgagtaaaaatcctcaaacttggtcgg
gtggaagatttccttcgcatagtacccgaaccgcctgacgactgcactgttaaaatcagt
cttgaacttcttcacgaacttggggccctagatgacgccgagtgccttactccattaggt
tttcatcttgctcagctgcccaccgatccccgcaccggcaaactaatattacttggagcc
atttttggatgccttgagcccatgctgtcgatcgccgctgcgttgaattttaaagatccg
tttgtggtgcctttgcatcaagaagaaaattaccgaaagagaaagaaggttctaggcgac
aaattattctccgatcacctgttaattgctaaagtgatgcgtcaatttcgagcagctcag
aacgaaggttatgccactgccaaggcttactgcatcgagaactttctaagcactagcacc
atgtcaatgctttcaaacatgatggatcagttctgtcgtgatttgcacgaacgccagttt
gtgaccagtgtctcccttagtgatcctgctgctaacgtaaactctaaaaacgattgtctt
gttcttgctgtactttgcgccggccttttccctaatgtggcaaacgtagcagtccctagt
cgtaacttgcccaaacgcaattcttcaaaaagtcctacttccgcttttaaagtgatgaca
ccagaggatggcccggtccttattcatccccgatcgatcaattacaacaccgatttcgct
aaatcgacttggttgtgctattacgacaaagttaaaagtacctccgtttatcttcatgat
tgttctgtagttcccccgttagccgttctgttctttggaggtgagcaacttttaggaaag
aaaaatggcaaaattaacagcaatggtttccgattcaagtgggatagtttggcgttggaa
aaaactcagtctcttcggttgtgttgggaaaactatctctgccatcgtgtttcgcatccc
ggagctacggactggtcacctgattccatggactctgcacttttgcgagcaattattcag
ttcaccactgctacatcagtgtcgctagatgaagagactggtttcttaatgttgaccaaa
gaggaagcaggttacagtcgcgtgtggtag
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