Daphnia pulicaria: 124350529
Help
Entry
124350529 CDS
T08670
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpz03036
]
124350529
Chromosome and associated proteins [BR:
dpz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124350529
microRNA pathway
RISC loading complex
124350529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
Dicer_platform
ResIII
Dicer_dsRBD
Helicase_C
PAZ
dsrm
Motif
Other DBs
NCBI-GeneID:
124350529
NCBI-ProteinID:
XP_046657214
LinkDB
All DBs
Position
7:complement(14114283..14129801)
Genome browser
AA seq
1634 aa
AA seq
DB search
MESPSKSCNVDTEFTPRDYQIELFQAALDENIIVYLPTGSGKTFIAALLIKEKSHEVTKP
LDSGGKRTVFLVPTVVLAIQQAAYLRRHTYLKVKEFYGSMGVDIWEKDRWNIEFDSNHVL
VMTAQIFVDILNHAFFSPHQLNLLVFDECHAAVKDAPMKQVLSKLKSCEVSQRPKILGLT
AALFRMRCKPEKVPDLIQQLSETMGCVVRIPSDVETVARSSTKPCETILQYEDKNSNPNP
DAEELSRIIFVMVSSLMQQLEQQYGEGNSKDGPDVNKQPDKIDVLFDALNDIDYLLSTIG
PYGAFHCAHVYIRILERTKSRAKTAQFLTDLIRVSALCQEVREVCTPYFAKYSPVDRLLL
FVQPRVIRLLEILRNFSPNQSSDELKNATFKMCAIVFVERRSMANVLYHFLKDIAKHDTT
LEFLKPLFTMGKAAGRNSSLKETQILNMKQNEIMHYFREGLCNLLVATSVLEEGIDIPDC
NLIIRFDRIKTYCDYVQTKGRARSKKAFYCILVSRGETESCLADLAQFHSIEQQLLSTGN
FEDERDNAIDNLFSQIIPPYVPFGEDGPRITLPSSISLINRYCGQLSSDPDVSLAPQLTT
KKVAESDVDPIQLQKIKDILKKLPTDASKYSSINNLFQCHLFLPLNSPLRDEVIGDVMPT
KRLAKRAVALKASIKLHEMKELDDNHLFPVPRLNVIDDESSTEDEENSAAPQLNKENIAV
YNRRLPGCFSNCRPLPGQPCFVYAIDFTLMKPCLDITKLYFPFAVDTKLAILTSKVIPAI
CPFPVVTRAGEFQVNLCGADSVILDQSQLGKLERFHQFVFQDVLFLWKRQLVFDVLASDL
QYLVVPLQTANDKIDFALVENMINAPAINWEKPPYTGDNFIFDSSRLIDSVIVPSYKPLG
TLNSFYVDRVSDLTPLTPFPNKEFETYASYFQLKYKLTLTNLQQQLLQVSREISGKNFLV
NRAASTREETPMHLVAELCHVHPLAGSIWKQVVWLPCILHRLDRMLVAEELRVLVYKEAN
IGIEFLPGSVNVSSVWCPLRLRPQKSRAESRCVADPTLLASTLKPSAFMDYLDLDVNMMW
SFEYDESEKDLSPNQSSIEQTPAETFIATSSPKKPSELSLPNPGSYSAFREFPDSIDEQR
NKWTDLANGNPSDDLPTCPPETFNLKFDSGNSGMLSKFGPSPGMILEALTLAKTHEGFDM
ERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLMRMRQINNKHLFKLGAKKDIGEFTV
AQRFELMANFLPPGFKTPTDPDTDINAHVQQYVLMKNVADCMEALIGVYLTTTGIKGAIK
LMDWMGLKTLPRLEIATFNEMNGFPILPSTFGSSTLNDTQLKDQEEALSQLFAGLESFEK
RLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQYTPAI
LTDLRSAMVNNETFAVMAVKNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNYFVLE
ETGEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALEKFNEKI
PISALRVLHERYPNALKFRKSESLADGRLCVAIEIQGTRVFKGAGGNSKTAKSAAAKYAL
SVLNKQDDNQVEEC
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggaatctccaagcaaatcatgtaatgttgatactgagttcactccaagggattatcag
attgaactgttccaagcagcgttggatgaaaacataattgtttacctaccaactggttca
ggaaagacattcattgcagcccttctgatcaaagaaaaatctcatgaagtcacaaagccg
ttggattcaggagggaaaaggacagttttccttgtacccaccgttgtgttggctattcaa
caggccgcctacttgcgacgccacacctatttgaaagttaaagagttctacgggagtatg
ggagttgacatctgggaaaaagacaggtggaacattgaatttgattccaaccatgtcctg
gtgatgactgctcaaatatttgtggacatcttgaaccatgcctttttctcacctcaccag
ctcaatttactggtcttcgacgagtgtcatgctgctgttaaggatgcaccgatgaagcaa
gttctttcaaaactgaaaagctgtgaagtttcccaacgtcccaaaattctgggattgact
gcagctctgtttaggatgagatgcaaaccggagaaggtgcctgatctaatccagcaactc
tccgaaacaatgggatgcgtcgtcaggattccctctgacgtagaaactgtcgcccgctct
tccaccaaaccgtgcgaaaccatcttacagtatgaagacaaaaattccaatccgaatcca
gatgcggaagaattaagtcggattatttttgtaatggtgtcttcccttatgcagcaactt
gaacaacagtacggcgaaggcaattctaaagatggacccgatgttaacaagcagcctgac
aaaatcgatgtgttgtttgatgcactgaacgacatagactatcttctgagcacaatagga
ccgtacggggcttttcattgtgcccatgtctacattcgcattttggagcgtaccaagagt
cgagccaagaccgcccaatttctgacagacctaatcagagtttctgctctctgccaggaa
gttcgggaagtttgcactccttatttcgccaagtattcaccggtggaccgacttttgctc
tttgttcagccgagagtgattcgtttattagaaatattacgaaattttagtcctaatcaa
agctcagatgaattaaaaaatgcaaccttcaagatgtgtgccatcgttttcgtcgagcga
cgttctatggctaatgtactttatcacttcctaaaggatatcgcgaaacatgacacaacg
ttagaatttttgaagccattgtttacgatgggcaaggcagcaggtcgaaactcatccctg
aaagaaactcaaattctcaacatgaaacaaaacgagattatgcattattttcgtgaaggt
ctctgcaacttgctagtggccacttctgtcctggaagaaggcattgatattcctgattgc
aatttaatcattagatttgatagaatcaaaacttactgtgattatgttcagaccaaaggt
cgggctagatcgaagaaagccttctattgcatattagtgagtcgtggtgagacggaaagc
tgcctggcggatttggcccaattccacagcattgagcagcagcttttgtccactggaaac
tttgaagacgaacgagataatgccatagacaacttgtttagtcaaatcatcccaccgtat
gttccatttggagaggatgggcctcgaattaccttaccaagcagcatatcactcatcaac
aggtactgtggtcaactctcttccgatccggatgttagtttggctccacaactgactacc
aagaaagttgcagaaagcgacgttgatcccatccagctacagaaaatcaaggacatatta
aagaaattaccgactgatgcttccaaatattcatcgatcaacaatttatttcaatgccat
ctctttcttccgttgaactctcccttgagagatgaggtcattggagatgttatgcccaca
aaacgtctagccaaacgagcagttgctttaaaagcatccatcaagctccacgaaatgaaa
gagctcgacgacaatcaccttttcccagtgccacgactaaatgtgatcgacgacgagtcg
tcaactgaagatgaagaaaattctgcagctcctcagctcaataaggaaaacatcgcagta
tacaaccgacgtctgcctggctgtttttccaattgccgccctcttcctggacagccgtgc
ttcgtctatgcgattgactttacgttgatgaagccttgcctagacatcacgaaactgtat
ttcccattcgccgtcgacacgaaactggccattttgacgtccaaagtcatccctgccatt
tgcccatttcctgtggtaacccgagccggtgaatttcaagtcaacttgtgcggagctgat
tcagttatccttgaccagagtcagctgggaaaactggaaagatttcatcaattcgttttc
caggatgttctctttttgtggaagcgacagctcgtttttgacgtgctggcctctgacttg
cagtacctggtggtccctctgcaaacggcaaacgacaagatcgactttgccctcgttgaa
aatatgatcaacgcaccagcaattaattgggagaaaccgccctacactggagataatttt
atctttgattcaagccggctcatcgattcggttatcgtcccgtcttataaaccgctgggc
actctgaactctttttacgtggaccgtgtttcagatttgacacccctcactccatttccc
aacaaagagtttgaaacgtacgcatcttatttccagctcaagtacaaactcacgttgact
aatctgcagcagcagcttcttcaagtcagtcgtgaaatatctggcaaaaatttcctcgtc
aacagagctgcttcgacaagagaagaaacgccaatgcatctagtggccgagttgtgtcat
gttcatccgctggccggatccatttggaaacaggtagtctggctcccttgcattctccac
cgtcttgatcgcatgttggtggctgaagaactccgtgtccttgtctacaaggaagccaac
attggaattgaattcttacccggatccgtcaacgtttcttccgtttggtgccctttgcga
cttcgaccccaaaagtctcgtgccgaaagccgctgtgttgcagaccccacacttttggcc
agcactttgaaaccttccgccttcatggattacttggatctcgacgtcaatatgatgtgg
agttttgagtatgatgaatcggaaaaagatctcagtccaaaccagtcttccatcgaacaa
accccggccgaaacattcatcgctacatcctcaccgaagaaaccaagtgagttgagtttg
cccaatcctggcagctattctgcattccgtgaatttccagattccattgacgagcaaagg
aacaaatggactgatctggctaatgggaatccgtcggatgacctaccaacttgtccaccg
gaaacttttaatctgaaattcgattccgggaactccggaatgctctccaaatttggccct
tcgcccggaatgatattagaagccctcactcttgccaagacgcacgaaggattcgacatg
gaacgttcggaaacgattggcgactccattttaaagttggtcatatccatttatgtgtac
ggagaaacgggtagtgaccgctgcgacgaaggcaggctcagcctcatgcggatgcgccag
atcaacaacaaacatctcttcaagttgggcgccaaaaaggacattggggaattcaccgtc
gctcaaagattcgaactaatggcgaatttcctccctcctggattcaaaacgccgacggat
cctgacactgacatcaatgctcatgtccagcaatatgtcctgatgaagaatgtggcagat
tgcatggaggctttgattggtgtttatctgaccacaactggaatcaagggcgccatcaaa
ctcatggactggatgggattgaaaactcttcctcgactcgagatcgccaccttcaacgaa
atgaatggattcccgatactcccgtcaacgtttggatcatccactttaaacgatactcaa
ctcaaagatcaagaagaggctctatcgcagctctttgccggattagaatcatttgaaaag
cgactccgctatactttcaagaacaaagctttgttgattgaagctttaactcacgcctcc
tacattcccaaccggatcaccaattgttaccagaggctggaattcctcggtgatgctgtg
ctagattatctcgttacgcggtattactatgacaatccttgtcaatacaccccggccatt
ctaacggatctccgttcggccatggtaaacaacgagacctttgctgtcatggcggtcaag
aaccgttttcacctctacttgaagcatctttccttgtctttaaacgtgattctggatcga
ttcgttcgatcacaagaagaaaacggacatctgctgatgcataattattttgttcttgaa
gaaaccggtgagcctcaccaatccctggccagcaatattgacgttcctaaagtgttgggc
gacattttcgagtcggtggcaggtgccatatttgtcgattccggcatgtcgctcgatgcg
gtgtggaaatcttacctgccctttttacacgacgcattggaaaaattcaatgagaagatt
cccatttctgccctgcgagtacttcatgagcgctaccctaacgccctcaaattcaggaaa
tcggaaagtcttgccgatgggagattgtgcgtggcgatagaaatccaagggacgcgtgtg
tttaagggcgctggcggtaattcgaaaacagctaaaagcgctgctgccaaatacgcactg
agcgttctcaacaaacaggacgacaatcaagttgaagaatgctga
DBGET
integrated database retrieval system
