Daphnia pulicaria: 124350601
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Entry
124350601 CDS
T08670
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
dpz
Daphnia pulicaria
Pathway
dpz03022
Basal transcription factors
dpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124350601
09124 Replication and repair
03420 Nucleotide excision repair
124350601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124350601
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124350601
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124350601
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124350601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Mac
Motif
Other DBs
NCBI-GeneID:
124350601
NCBI-ProteinID:
XP_046657335
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All DBs
Position
7:complement(14267498..14269842)
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AA seq
556 aa
AA seq
DB search
MTSSSSESILLLVPHVKLKKNEGELYLMSERLGWMVGNKDSFNVTHKYCDIKTQKISPEG
KPKVQLQVCLHDGNATTFQFVNPAGQAEQMADRDKVKDLLQLTLPKFKRMINKDLEEKKL
FLSENPQYRQLYMDLVKSNVISAEEFWADHATQFIKQQQDAKNASQQDVGISASFLADIK
PQITDGCNGGVRYLLTSDVMASIFRTYPSVKQKHLKCVPNKMTEEEFWKKFFSSHYLHRD
KNINDTKDLFTDCGKQDEQILRQDLSTAIKDPLLDLTTLNDVVEEESSSTPSNSKINNIA
HQNMIRRFNQHSILVLKASEQAPGEQALESSVPEPAPSKRIRLQEAMSYEDLESNDTDPT
VQLNLSRIERYLNGPPTTVQSQTGVNGNGLTAAHFDIDANAFKSILGRWMRGGGERYNPL
DVLNSATAVNVLGELSIGGTLMRGSQPNSAIHLTSELQKELKELYVSLSEILKHFWAAFP
PSSPELVQKTNRMIDALHKFNQAKLAPYEQKLIQASTSSEAENILKPLRFQLQAAIRKHS
QLSERRPLPRAAVSSM
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctcatcatcagaaagcatacttttattagttcctcacgttaaacttaagaaa
aatgaaggagaactatatttgatgtccgaacgattggggtggatggttggtaataaagac
agtttcaatgtaacgcataaatattgtgatataaaaactcaaaagatttcacctgaagga
aaacctaaagtgcagttgcaagtctgcttgcatgatggaaatgccacaacttttcagttt
gttaatccagcaggacaagctgaacagatggctgaccgagacaaagtaaaagatctgctt
caactaaccctgcctaaatttaagaggatgattaacaaagatcttgaagaaaagaaactt
tttctgtctgaaaatccacaatatcggcagctatacatggatcttgtaaaatcaaatgtc
atatcagctgaagaattttgggctgaccatgcaactcagtttatcaaacaacaacaagat
gctaaaaatgctagtcaacaggatgtcggtatctcagcttcattcttggctgatatcaaa
cctcagattacagatggctgtaatggtggtgtcaggtatcttctaacatctgatgtgatg
gccagcatattcagaacatacccatctgttaaacaaaaacatcttaaatgtgtaccaaac
aaaatgactgaagaagaattttggaaaaagtttttctcttcccactatctgcatcgagat
aaaaacatcaatgatactaaagatttgtttacggattgcggcaagcaggatgagcaaatc
ctaagacaagatttatcaactgccatcaaagacccactccttgatctaactacccttaat
gatgttgttgaagaagaatcctcttcaactccatcaaactccaaaattaacaatattgcc
catcaaaacatgatccgacggtttaatcagcattccattttagtattaaaagcatcggaa
caagcacctggggaacaagcactggaatcttctgttcccgaacccgctccgtcaaagagg
attcggttacaagaagcgatgtcgtatgaggatttggaatctaatgacacagaccctacc
gttcaattgaatctttcacgtattgagagatacttaaatggtcctcctacaacagtgcaa
tcacaaacaggggttaacggaaatggattaactgctgctcattttgatattgatgccaac
gccttcaaatctattctaggtcgatggatgcgtggaggtggagaaagatataatccgttg
gatgtgctcaattccgcaacagcagtaaacgtcttaggtgaattgtcgatcggtggaaca
cttatgagaggctctcaaccaaattcggcgattcatttgaccagtgaattgcaaaaagag
ctgaaagaactgtacgtctcattaagtgaaattcttaagcatttttgggctgctttccct
ccgtcgtcgcctgaactcgttcaaaagaccaatcgcatgattgatgctctacacaaattt
aatcaagcaaagttggccccttacgaacagaaacttattcaggctagcacgtcaagtgag
gcagaaaatattctgaagcccctgagattccaactacaggcagccataaggaaacattcc
caattatctgaaaggcgtcctttgccaagagcagccgtatcttcaatgtga
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