Daphnia pulicaria: 124351084
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Entry
124351084 CDS
T08670
Name
(RefSeq) DNA mismatch repair protein Msh3-like isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
dpz
Daphnia pulicaria
Pathway
dpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124351084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124351084
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124351084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
124351084
NCBI-ProteinID:
XP_046657802
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All DBs
Position
7:11614921..11619254
Genome browser
AA seq
1013 aa
AA seq
DB search
MKRRRSVEPKKSTSNNQLKISKFFHANPSIQNDAIVETSTIKSVKSFKVGIPFGIDVLQN
ESPIAEKNNERVPSSGILKLTKFVHSDDNNLNEETQENMDTAAMCSSEVNFSPSKVHGDL
PKTISSSLLDHKELNLKLTPLEQQIVALKEKYPELLLVVECGYKFQIFGEDADKAGTILN
MATYKKNNFFSCSFPLHRLMVHVKKLVTHGCKVGIVRQKETTALKAVGASKHAPFKRELE
IVYTKATLIVDDDCDGVIDVQCVDIPLCIIFVAEAYAKTDGSTAQIGILAFFTQDAKCIF
DHFQDDCARSRLDSLLTHLQPAEIVLPDQGITNRTLDLVKQFALYKLSNGDCIRTEFTSH
FHWAIASEMLSKVYGDDADMMDKLKDIPPVIHCCIAMAHEHLKQFKLEQMVKMINDVKPY
EAFDDNVLQMDGNCVRNLNLVPLTNETGPQLIGSVYHVLNQTRTKPGARLLRSWLLRPLA
CRDLIESRLEAVGFFVDHFEDPELAPFKKFLKSLPDLEKQLTAVLHSRSRPKEFHGLCKS
WEQLTILCVELQSHYKNVLPLSVALLINSAVDSLKMAPFYAEQLSDVAISSGEKTKLFNR
LEDYPEMKMLFEKIQQTESKIQALKPSICKSIGLLALNYVTVSGDEYLIEVKNALIRAVP
SSWIKISATKQCCRYRSPEVQQLFGELCCLRELLKISADEAWLQFQRQVSTTSYFTFRRA
NNAIATLDCLIALSDVAKSENYVRPTFVDEAGVLNISQGRHPVLSRILQQTSSAEYIPND
TKLNTDGVRCMIITGPNMGGKSCLLSQVGILVVLAQIGSFVPAVETTLSVFKSIFIRMGL
HDEIYAGRSTFFIEMMETSAILKSCTSRSLVIIDELGRGTGTHDGSAIAYAALKYLVKQT
KCITLFVTHYPVIVQLEDEFPGHVANYHMGYILESEKADNVQAKCDEEALVFLYTLTPRN
SPKSFALNVARLAGIPSSITDRAKLKSESFFTVAESQRTKIAEFKRIFYKNHE
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaagagacgacggtctgtggagccaaagaaaagtaccagcaataatcaactaaagatt
tcgaagttttttcatgccaatcccagcattcaaaatgatgcaatcgtggaaactagtact
attaaatccgtaaaatcctttaaggttggtattccttttggaattgatgttttgcagaat
gaatcgcctattgctgaaaaaaacaatgaaagagtaccatcgagtggcatattgaagctt
acaaaatttgttcattctgatgacaataatttgaatgaagaaactcaagaaaacatggac
acagcagcaatgtgttcatcagaagttaatttttcaccatccaaagtccatggagactta
ccaaaaaccatcagtagcagcctattagatcacaaagaattaaatttgaaattgacccct
ctggaacaacaaatagttgcactgaaggagaaatatcctgaacttctccttgtggttgag
tgtggctataaattccaaatatttggagaagatgcagacaaagctggaactatattgaac
atggctacttacaagaaaaacaatttttttagctgtagttttcctcttcatcgtttgatg
gttcacgtcaagaaactagttacacatggatgcaaagttggaatcgttcgccagaaagaa
acgactgctctgaaagcggtaggagcctctaagcatgcccctttcaaaagggaactagag
attgtttacactaaagcaacgttaattgttgacgatgattgcgacggcgtcatcgacgtc
caatgtgtagacattccgctgtgtatcattttcgtcgcagaagcctacgccaagaccgat
gggtcaacagcccaaattggaattttggcatttttcactcaagacgcaaaatgtattttt
gaccattttcaagatgattgcgctcgaagtcgcttggacagtttattgacacacctgcag
ccggcagagatagtattgcccgatcaaggaatcactaatcgaacacttgatcttgtcaag
caatttgctctgtataaactgtctaacggagattgcattcgaacggaatttacctcacat
ttccattgggccattgcctcggaaatgctttcgaaagtttatggtgatgatgctgatatg
atggacaaattgaaagatatcccacccgtaattcactgttgtattgctatggctcacgaa
cacttaaaacaatttaaattggagcaaatggttaaaatgattaacgatgtgaaaccctac
gaagctttcgatgacaacgttttacaaatggatggaaactgcgtgcggaatttaaatttg
gtacccttaaccaatgaaactggtccacagcttataggttcagtttatcatgttctcaat
caaacgaggacgaaacctggcgctaggcttttgcgttcatggcttttacgtccgttggct
tgccgtgatttaatcgaatcaagactcgaagccgtaggatttttcgttgaccacttcgaa
gatcctgaactagcaccatttaaaaagtttcttaaatctcttccagatttagaaaaacaa
ttaactgcggttcttcactccagatcaaggccaaaggagtttcatggactgtgcaagtct
tgggaacaactcacaattttatgtgttgaacttcaatctcactacaaaaatgtcttaccg
ttatctgttgcacttttgatcaattcggctgtagattctttgaaaatggcgcctttctat
gctgaacaattgagtgacgttgctatttcctctggtgaaaaaacgaaattatttaatcgt
ctcgaggattatccagaaatgaaaatgttgtttgaaaagattcagcaaacagaaagcaaa
attcaagcactgaaaccctccatttgtaaaagcattggcttgctagcattgaattacgta
accgtatctggcgacgaatatctaattgaggttaaaaacgctttgattcgtgcggtcccc
tcatcgtggatcaaaattagcgcgacgaagcaatgttgtcgctatcgaagccctgaagtc
cagcaacttttcggggaattgtgttgcctgagagaattgttaaaaatttctgcagacgag
gcttggttacaatttcaacgtcaagtgtccacgacatcgtatttcacttttaggagagct
aataatgcaattgctacattagattgtcttattgctctttccgacgtggcaaaatccgaa
aattacgttagaccaacgttcgtagatgaagctggagtattgaatatctcacaaggacgc
catcctgttttaagtcgtatactccagcaaacttccagcgctgaatatatcccaaatgac
acaaaattgaataccgatggcgtccgttgtatgattatcacaggacctaatatgggcgga
aaatcctgcctgctttcacaagtaggaattctagtcgtcctggctcaaattggttctttc
gttccagcagtagagacaactcttagtgtcttcaaatccatttttatcagaatgggactg
catgacgaaatatatgcaggaagaagtaccttttttatagaaatgatggaaacgtccgcc
attctgaagagttgtacttctcgctctttggtgattatcgatgagctcggtcgaggaaca
ggaacacatgacggtagtgctattgcgtatgcagctcttaaataccttgtgaaacagacg
aaatgtatcacgctctttgtaacgcactacccagtaattgtgcaattggaggacgaattc
ccaggtcacgtggctaattatcacatgggttatattttagagtcagagaaagccgacaat
gtgcaagctaaatgcgatgaggaggccttggttttcctatatacactcactcccagaaat
agccctaaaagttttgcattaaatgttgcccgtcttgccggaattccgtcgtccattact
gatagggccaaattgaagtcggaatcattctttactgtagcggaatcacagcgaaccaaa
attgcggaattcaaacgcatattttacaaaaatcatgaataa
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