Deinococcus radiodurans: DR_A0188
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Entry
DR_A0188 CDS
T00025
Name
(GenBank) excinuclease ABC, subunit A
KO
K03701
excinuclease ABC subunit A
Organism
dra
Deinococcus radiodurans
Pathway
dra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DR_A0188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dra03400
]
DR_A0188
DNA repair and recombination proteins [BR:
dra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DR_A0188
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DR_A0188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
UvrA_DNA-bind
AAA_29
DnaJ_CXXCXGXG
nSTAND1
AAA_16
AAA_33
DUF4350
RsgA_GTPase
AAA_25
ATPase
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AAF12187
UniProt:
Q9RYW8
Structure
PDB
PDBj
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All DBs
Position
2:complement(194287..197055)
Genome browser
AA seq
922 aa
AA seq
DB search
MVTSSSMRRCRGALSLSFWIFLVLRSVLSRPVFGAAAGPAVQSARQCSASRGTGESDPPP
FQPTLRLFPPSRRRRSYCRAMTPSRPSPDFPDGGFVQVRGARQHNLKDISVKVPRDALVV
FTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFNQAGVPDVDAIDGLPPAVALQQA
RGTPTARSSVGSVTTLSNLLRMLYSRAGDYPPGQGIVYAEGFSPNTPEGACPECHGLGRV
YTVTEDSMVPDPSLTIRERAVAAWPQAWGGQNQRDILVTLGIDVDVPWRELPEETRHWIL
FTDEQPVVPVYPGLTPAETQRALKKKMEPSYMGTFSSARRHVLHTFANTESASMKKRVQG
YMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVK
NRPEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFG
VVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEK
GGEILYSGPPEGLKHVPESQTGQYLFADRHTEPHTPREPAGWLELNGVTRNNLDNLDVRF
PLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDL
AQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGR
CEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDF
FADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELQRSGRGGTVYVLDEP
TTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQG
TPAEVAQAAGSVTAPYLRAALR
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacatcgtcctccatgcgccgttgccggggcgccttgtcgttatctttctggatc
tttctggtcctgcggtctgtcctgtcccgccccgtgttcggggcagcggccggcccagca
gtgcagtcagcccggcagtgtagcgcatcgcgcggcacaggggagagcgacccgccgcct
tttcagccaaccttgcgacttttcccgccttcccggcgccgccgctcatactgccgggca
atgactccttcccgcccttctcctgactttccagatggcggcttcgtgcaggtgcgcggc
gcccgtcagcacaacctcaaagacatctcggttaaggtgccgcgcgacgccctggtggtg
tttaccggcgtctccggctcgggcaagtcctcgctggcgttcggcaccctctacgccgag
gcgcagcgccgctacctcgaatcggtgtcgccctacgcccggcggttgttcaatcaggcc
ggggtgcccgacgtggacgccattgacggcctgccccctgctgtggcgctgcagcaagcg
cgcggcacgcccaccgcccgctcctcggtgggcagcgtgaccaccctctccaacctgctg
cggatgctgtattcgcgcgccggtgactatccgcccggccagggcatcgtgtacgccgag
ggtttttcgcccaacacccccgagggcgcttgtccggaatgtcacgggctgggccgggtg
tacaccgtcaccgaggattcgatggttcccgaccccagcctcaccatccgcgagcgggcg
gtggcggcgtggccgcaggcctggggtgggcagaaccagcgcgacattctggtcacgctg
ggcatcgacgtggacgtgccctggcgcgagctgccggaggaaacgcgtcactggattctc
tttaccgacgagcagccggtggtgccggtctacccgggcctgacccccgccgaaacgcag
cgcgccttgaaaaagaagatggaacccagctacatgggcaccttttccagcgcccggcgc
cacgtgctgcacaccttcgccaataccgaaagcgcctccatgaaaaagcgggtgcagggc
tacatgatttctgaggagtgcccgctgtgccacggcaaacggctgcgtcaggaggcgctg
aacgtgacctttgccgggctggacatcaccgagctgtcgcggctgccgctggcgcgagtc
tcggagctactacgcccctacgccgaggagcgcgaaccgggccacgccgaacgcgtcaag
aaccggcccgagcaggccatcgccctgcaacggatggccgccgacctggtcaagcggctg
gacgtgctgctgcacctggggctgggctatctgggactggaccgctccacgcccaccctc
tcgcccggcgagttgcagcgcctgcgcctcgccacgcagctgtattccaacctcttcggc
gtggtgtatgtgctggacgagccctccgccgggctgcaccccgccgacaccgaggcgctg
ctctcggcgctggagaacctcaagcggggcggcaactccctgttcgtggtggaacacgat
ctggacgtgattcgccgcgccgactggctggtggacgtgggcccggaagccggcgagaaa
ggcggggaaattctctacagcgggccgccggaagggctgaaacacgtgcccgagtcccag
accggccagtatctctttgccgaccgccacaccgaaccgcatacgccgcgtgagcctgcc
ggctggctggaactgaacggcgtgacccgcaacaacctggataatctggacgtgcgcttt
ccactgggcgtgatgacctcggtgacgggcgtatcgggttcgggcaagtccaccctggtg
agtcaggcgctggtggatgcgctggcggcgcacttcggacagccggtgaaccccgacccc
gaggacgacgaagaccccgccgaccacaccgccggcagcgcgcggctgggcggcgacctg
gcgcagatcacccggctggtgcgggtggaccagaagccgattggccgcactccgcgcagc
aacatggcgacctacacggggctcttcgaccaggttcgcaagctgtttgcggccaccccg
ctggccaagaagcgcggctacaacgcaggccgcttctccttcaacgtgaaaggcggacgc
tgtgaacactgccagggcgagggctgggtgatggtggaactgctgttcctgcccagcgtg
tacgcgccctgcccggtgtgccacggcacccgctacaacgccgaaacgctggaagtggag
taccgtggcaaaaatatcgccgacgtgctggccctgacggtagacgaggcacacgacttt
ttcgccgacgagagcgccattttccgggcgctggacaccctgcgcgaggtcggtttgggc
tacctgcggctggggcaacccgccaccgaactttcgggcggtgaggcgcagcgcatcaaa
ctcgcgaccgagttgcagcgcagcgggcgcggcggcaccgtctacgtgctggacgaaccc
accaccggcctgcaccccgccgacgtggagcgtttgcagcggcaactggtcaagctggtg
gacgccggcaacaccgtcattgcggtagagcacaagatgcaggtggtggccgcctccgac
tgggtgctcgacatcggccccggcgcgggcgaggacggcgggcggctggtggcccagggc
acgcccgccgaggtggcgcaggcggcgggaagtgtgacggcgccttacctgcgagcggct
ctcaggtaa
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