Deinococcus rubellus: N0D28_02935
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Entry
N0D28_02935 CDS
T08504
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
drb
Deinococcus rubellus
Brite
KEGG Orthology (KO) [BR:
drb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
drb03016
]
N0D28_02935
Enzymes [BR:
drb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N0D28_02935
Transfer RNA biogenesis [BR:
drb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N0D28_02935
Prokaryotic type
tRNA splicing ligases
N0D28_02935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UWX64635
LinkDB
All DBs
Position
complement(565362..566762)
Genome browser
AA seq
466 aa
AA seq
DB search
MNGKHITKLGFTNTSIGLALAAAQLREDTGLGRQAILDELSAVKSQPAAYQTGEYAALAH
ELLAQQTHTAFHAADALRPAALPYAQFGAELIEANARAQMDVAMQLPIARAGALMPDAHV
GYGLPIGGVLATENTVIPYGVGVDIGCAMHLSVFAVPPEHLKTAEALHLLQKHTRFGAGI
GFERRERLGHAVLDEAAWDEQPVLRRLHDKAAEQIGSSGSGNHFAEFGAFTLSAPEAGLE
AGTYLALLSHSGSRGFGAQVAGHFTKLAESLHPALDTSARKLAWLDLGSEAGEAYWQAMN
LAGRYALANHEQLHARLSRALGEVAALSARNSHNLAWKETVNGEELIVHRKGATPAAAGQ
LGLIPGSMADPGYLVRGKGYAPALGSASHGAGRQLGRKAAQAALSKSVVSAYLRDRGVTL
IGGGVDEAPQAYKRIEAVIAAQSELVEVLGEFRPRVVRMDSGSEDI
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaaacacatcaccaaactcggcttcaccaacacaagtatcggcctggcactc
gccgccgcccagctcagagaggacacggggctgggtcgtcaggcaattctggacgaactc
tcggcagtcaaatctcagcccgccgcctaccaaacgggcgagtatgcggcgctggcacac
gaactgctggcccagcagacccacaccgcattccacgccgccgatgccctgcgccctgcc
gcgctgccctatgcccagttcggcgcagagctgatcgaggcaaatgcgcgcgcccagatg
gacgtggccatgcagctgccgattgcccgcgccggagcgctgatgcccgacgcccacgtg
ggctacggcctgccgattggcggggtgctggccaccgagaacacagtcattccctacggg
gtcggggtggacatcggctgcgccatgcacctctcggtctttgccgtccccccggagcat
ctcaagaccgctgaggccctgcacctgctgcaaaagcacacccgcttcggcgcgggcatc
ggcttcgagcgccgcgaacgcctgggtcatgccgtgctggacgaggccgcctgggacgag
cagccggtcctgcgccgcctgcacgacaaggccgccgagcagatcggcagctcgggcagc
ggcaaccacttcgccgagttcggcgcgttcaccctgagcgcaccggaagcgggcctggaa
gccggaacctatctggccctgctctcgcacagcggctcacgcggtttcggggcgcaggtg
gcgggccacttcaccaaactggccgagagcctgcacccggccctggataccagcgccagg
aaactcgcctggctcgacctgggcagcgaggcgggcgaggcatactggcaggccatgaat
ttggcaggccgctacgcgctggccaaccacgagcagcttcacgcccgcctcagccgcgcc
ctgggcgaagtcgccgcgctgagtgcccgcaacagccacaacctggcctggaaggaaacg
gtgaacggcgaggagctgatcgttcaccgcaagggagccacgcccgccgccgccgggcag
ctcggcctgattcccggcagcatggccgaccccggctacctggtgcgcggcaagggttac
gccccggcactgggcagcgcctcgcacggcgcggggcggcagctcggacgcaaagcggcc
caggcggcactcagcaaatcggtggtcagcgcttacctcagggaccggggcgtgacattg
atcggcggcggcgtcgacgaggctccccaggcctacaagcgcatcgaggcggtgatcgcg
gcccagagcgagctggtggaggtgctgggcgagttccgaccccgcgtggtccggatggat
tcgggcagcgaggacatctga
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